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Detailed information on CNT30298748


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 5e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555700Triticum aestivumOryza glaberrima68.0635.4386.5326forward
CNT30578501Triticum aestivumOryza barthii68.0629.0686.5326forward
CNT30115743Triticum aestivumOryza nivara69.129.6183.99331forward

Expression of CNT30298748

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 2 (42 aa)
KDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30298748
GAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCT
TGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGG
GTACTCCTTCTTGACCTCTTCCACCTCGTTGATCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAG
TACCCAGGGGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCATTTGGAGCGGATCAGGTAGGACAGGGTCTCGA
ACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACATTTTTAATACATTAACTATAATTCTAGTTCTAC