Detailed information on CNT30298208


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30176909Triticum aestivumSecale cereale52.5864.5293.2500forward
CNT30664821Triticum aestivumTriticum dicoccoides75.29100100716forward
CNT30683520Triticum aestivumTriticum urartu78.0251.8287.87742forward

Expression of CNT30298208

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSSIYSIRNKPHSRLSVRPAVKCSNSPHVTFFLRVLCYIRLDAVVHALTIFLDERT

>peptide 2 (78 aa)
MPPFPSWTDQIPWRRWGTAGHAAGWLQHCFAGMPQEAVQAHIKTGARCTLAGQRLQIQDTTTNLWMKSQELLPCRRTP*

>peptide 3 (34 aa)
MGSTRPRVGRWLALHDSACRDPSRRAHPEACTSV*

>peptide 4 (45 aa)
MRPAGCSTASLGCRKRPCRRTSRREPDAHSPDRGYRFKTQQQTYG*

>peptide 5 (45 aa)
MHTRRTEVTDSRHNNKPMDEVAGAPSMPKNTVDAGPRERAILCRS*

Sequence

>CNT30298208
AATTTTCTGAAAAGTCCTTCTCCTTGCCTTATCCGCCGCGGACGCTTCGAGCTAGTACTACCATTATTCCACTGAACTAAGCTCCGTGAGTGAGAGAGAT
AGAGAGTTCCAGAAAGTGAGGTCCGCCGTCCGGCAGCGTCGTGGTCGTGGCGAGCGACAGAGGGAGCAGCCGCGGCTGCCGCTGCCTGACTCCGGCGCGC
CCAAGCCCCGGCCAAGGCTGGAGCAGCTGCTCTGGCATGCCGCCATTCCCCTCCTGGACCGACCAGATCCCTTGGAGAAGGTGGGGAACTGCAGGGCATG
CGGCCGGCTGGCTGCAGCACTGCTTCGCTGGGATGCCGCAAGAGGCCGTGCAGGCGCACATCAAGACGGGAGCCAGATGCACACTCGCCGGACAGAGGTT
ACAGATTCAAGACACAACAACAAACCTATGGATGAAGTCGCAGGAGCTCCTTCCATGCCGAAGAACACCGTAGATGCTGGTCCACGTGAGAGGGCAATTC
TCTGCCGATCCTGATCTATTCTCGTGTGATCCACAATGGAGTAGATAGATAGGAGAAAGAATGTTGGAGATTTTGGCGGCAATCTGTTGATACGCGCGAG
AAAGAAAGGCAGTTTTACTGATTTTATGTAATTAGAGAGATACGGGCTGGTTGTTTTAGTGATGGGGTCCACCAGGCCACGTGTTGGCCGCTGGTTGGCC
CTGCACGATAGTGCGTGCAGGGATCCCAGCAGGAGAGCCCATCCGGAGGCATGTACATCAGTATAGACGCACCATCCGTACATGTCATCTATATACTCCA
TTAGAAATAAACCACATAGCAGGCTGTCTGTTAGGCCAGCCGTAAAATGCTCTAACTCCCCCCACGTCACGTTTTTCCTACGTGTCCTTTGTTACATACG
ACTAGATGCCGTTGTACATGCCCTTACAATATTTTTGGATGAGCGCACCCA