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Detailed information on CNT30297942


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188155Triticum aestivumSecale cereale63.4253.6998.94378forward
CNT30684741Triticum aestivumTriticum urartu101.0171.3398.84602forward

Expression of CNT30297942

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 2 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVMLCACTRLGLPR*

Sequence

>CNT30297942
TGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTC
TCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACG
GACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAG
AGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGA
GCTCGGCGGCGGTGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACAC
GGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAG