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Detailed information on CNT30297908


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30254684Triticum aestivumAvena sativa10.6134.6791.0378forward

Expression of CNT30297908

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

>peptide 2 (51 aa)
MFHALVREAGALTGTWESLALRLASVAEKTVYTSTKVTAGLMWPPEMPAVQ*

>peptide 3 (54 aa)
VPRLLLVVDDGGAEGARRVDAGAGDGDRRQVHQEHREPDRQRRQDLHRIHPYIS*

>peptide 4 (59 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGSGARICTESIHTSVNLFIIHEMICSTR*

Sequence

>CNT30297908
CGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGGTGCACCAG
GAACACCGCGAACCCGATCGGCAGCGGCGCCAGGATCTGCACCGAATCCATCCATACATCAGTTAATTTGTTCATCATCCACGAAATGATATGTTCCACG
CGCTAGTTAGAGAGGCCGGTGCACTTACGGGGACGTGGGAGTCTCTGGCGCTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTACACGAGCACGAAGGT
GACGGCGGGGTTGATGTGGCCGCCGGAGATGCCGGCGGTGCAGTAGACGAGCACGAAGATCATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACG
GTGCCGCACTTGGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCACGCTGATGTACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCG
CGCGGTAGAAGGACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCC
GATCGGCTGCCGCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCCTTGCCCTCCATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGC
AGAGGAGATGAGATGATGATGGATGGGTGTGCGAG