Detailed information on CNT30297885


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 4e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Triticum aestivumOryza sativa69.5557.1886.41434forward
CNT30615812Triticum aestivumSesamum indicum9.9429.1187.162forward
CNT30394052Triticum aestivumTriticum turgidum80.6135.15100503forward
CNT3084566Triticum aestivumVigna radiata19.5520.7189.34122forward
CNT30595794Triticum aestivumOryza meridionalis36.06102.7484.89225forward
CNT30148622Triticum aestivumBrachypodium distachyon18.1146.3191.15113forward
CNT30603734Triticum aestivumOryza punctata62.9829.9388.8393forward

Expression of CNT30297885

Peptides detected in this lncRNA

>peptide 1 (45 aa)
VPRLLLVVDDGGAEGARRVDAGAGDGDRRQVHQEHREPDRHCITM*

>peptide 2 (42 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGTASPCRTRPG*

>peptide 3 (48 aa)
MPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

Sequence

>CNT30297885
CGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGGTGCACCAG
GAACACCGCGAACCCGATCGGCACTGCATCACCATGTAGAACACGGCCCGGGTGAGCGACAGCTTCCTGGCCAGGAACAGCCCGAAGGTGACGGCGGGGT
TGATGTGGCCGCCGGAGATGCCGGCGGTGCAGTAGACGAGCACGAAGATCATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACGGTGCCGCACTT
GGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCACGCTGATGTACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCGCGCGGTAGAAG
GACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCCGATCGGCTGCC
GCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCCTTGCCCTCCATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGCAGAGGAGATGA
GATGATGATGGATGGGTGTGCGAG