« Back to Triticum aestivum search


Detailed information on CNT30297784


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 4e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523825Triticum aestivumSetaria italica21.9260.7687.5192forward
CNT30640394Triticum aestivumNymphaea colorata16.2128.483.1142forward
CNT30375565Triticum aestivumArabidopsis thaliana6.0521.4688.6853forward
CNT3019525Triticum aestivumCitrullus lanatus10.542.0184.7892forward
CNT30224613Triticum aestivumHordeum vulgare16.5553.5199.31145forward
CNT30564991Triticum aestivumActinidia chinensis16.4435.6486.11144forward
CNT30590151Triticum aestivumMusa acuminata18.2632.1985.62160forward
CNT30552571Triticum aestivumOryza glaberrima11.5339.9288.12101forward
CNT30261241Triticum aestivumBrassica rapa10.7325.8284.0494forward
CNT30465879Triticum aestivumSaccharum spontaneum23.6321.6888.41207forward
CNT30131632Triticum aestivumLolium perenne23.9795.8985.71210forward
CNT30340874Triticum aestivumEragrostis tef6.8522.229060reverse complement
CNT3024497Triticum aestivumPopulus trichocarpa6.9621.7190.1661forward
CNT30325169Triticum aestivumAsparagus officinalis13.745.2884.17120forward
CNT3038712Triticum aestivumCucumis melo7.8823.5585.5169forward
CNT30495761Triticum aestivumDigitaria exilis17.8139.887.18156forward
CNT30116468Triticum aestivumOryza nivara33.941.8386.2297forward

Expression of CNT30297784

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MFHALVREAGALTGTWESLALRLASVAEKTVYTSTKVPTISAPRPSPLVYPGATELAPPPLPMYSVVWNPFTTPAPQMAPRHCITM*

>peptide 2 (59 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGSGARICTESIHTSVNLFIIHEMICSTR*

>peptide 3 (54 aa)
VPRLLLVVDDGGAEGARRVDAGAGDGDRRQVHQEHREPDRQRRQDLHRIHPYIS*

>peptide 4 (48 aa)
MPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

Sequence

>CNT30297784
CGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGGTGCACCAG
GAACACCGCGAACCCGATCGGCAGCGGCGCCAGGATCTGCACCGAATCCATCCATACATCAGTTAATTTGTTCATCATCCACGAAATGATATGTTCCACG
CGCTAGTTAGAGAGGCCGGTGCACTTACGGGGACGTGGGAGTCTCTGGCGCTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTACACGAGCACGAAGGT
CCCCACGATCTCCGCCCCCAGGCCGTCGCCCTTGGTGTACCCCGGCGCCACCGAGTTGGCGCCGCCGCCGTTGCCCATGTACAGCGTGGTCTGGAACCCC
TTCACCACCCCGGCGCCGCAGATGGCCCCCAGGCACTGCATCACCATGTAGAACACGGCCCGGGTGAGCGACAGCTTCCTGGCCAGGAACAGCCCGAAGA
TCATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACGGTGCCGCACTTGGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCACGCTGAT
GTACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCGCGCGGTAGAAGGACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGGCGGCGGC
TCCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCCGATCGGCTGCCGCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCCTTGCCCT
CCATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGCAGAGGAGATGAGATGATGATGGATGGGTGTGCGAG