« Back to Triticum aestivum search


Detailed information on CNT30297243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697318Triticum aestivumOryza sativa38.2635.492.98114forward
CNT30676942Triticum aestivumSetaria viridis38.2623.4194.74114forward
CNT30524376Triticum aestivumSetaria italica38.2619.1394.74114forward
CNT30184672Triticum aestivumSecale cereale64.0957.8895.81191forward
CNT30223766Triticum aestivumHordeum vulgare79.1948.6697.03236forward
CNT30390938Triticum aestivumTriticum turgidum78.5244.5794.44234forward
CNT30555270Triticum aestivumOryza glaberrima37.2523.9794.59111forward
CNT30439786Triticum aestivumAegilops tauschii10084.66100298forward
CNT30662749Triticum aestivumTriticum dicoccoides94.3101.4495.02281forward
CNT304300Triticum aestivumZea mays35.5716.4393.4106forward
CNT30117872Triticum aestivumOryza nivara37.2534.5895.5111forward

Expression of CNT30297243

Peptides detected in this lncRNA

>peptide 1 (97 aa)
LPSEIRTIMFLLPLIIYTYGTFVLSYFSPVKFTQHMMLHRAHRTQLIHQQPTAADGQSTASSQAGHPLGGAGDDGEQVDGDAVAEVVEGVAVKEKGAS

>peptide 2 (73 aa)
TPIRNQNDHVSSALDNLHVRHIRTLILFPGKIHTAHDAASRASHAADPSTADGGGRAINGQLTGWAPSRRRRR*

Sequence

>CNT30297243
TACTCCCATCAGAAATCAGAACGATCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCAC
ACAGCACATGATGCTGCATCGCGCGCATCGCACGCAGCTGATCCATCAACAGCCGACGGCGGCGGACGGGCAATCAACGGCCAGCTCACAGGCTGGGCAC
CCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCAAGGAGAAGGGCGCCAGTCT