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Detailed information on CNT30297056


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30390869Triticum aestivumTriticum turgidum46.4933.8399.37159forward
CNT30438779Triticum aestivumAegilops tauschii10054.2100342forward
CNT30249379Triticum aestivumAvena sativa51.7544.5897.74177forward
CNT30664041Triticum aestivumTriticum dicoccoides100.2991.4793.29343forward
CNT30135675Triticum aestivumLolium perenne51.4646.4496.02176forward
CNT30322408Triticum aestivumAsparagus officinalis42.6916.884.93146forward
CNT30151052Triticum aestivumBrachypodium distachyon30.745.2697.14105forward
CNT30104243Triticum aestivumOryza rufipogon5031.6792.98171forward
CNT30117952Triticum aestivumOryza nivara49.1213.5292.86168forward
CNT3039554Triticum aestivumMarchantia polymorpha47.3744.2685.8162forward

Expression of CNT30297056

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MKKPSMENMASRPFLISFTLSSAAWSGSVARPSGSNGPPGWSLSSNS

>peptide 2 (64 aa)
VSSALDNLHVRHIRTLILFPGKIHTAHDAASRASHAADPSTADGGGRGSLRCAHRFSKGPSPVT*

>peptide 3 (49 aa)
FLLPLIIYTYGTFVLSYFSPVKFTQHMMLHRAHRTQLIHQQPTAADGGR*

Sequence

>CNT30297056
GTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACATGATGCTGCATCGCGCGCAT
CGCACGCAGCTGATCCATCAACAGCCGACGGCGGCGGACGGGGGTCGCTGAGGTGCGCGCACAGGTTCTCAAAGGGGCCCTCGCCGGTGACGTAGGCCTG
GATGAAGAAGCCCAGCATGGAGAACATGGCCAGCCGTCCGTTCTTGATCTCCTTCACCTTGAGCAGCGCCGCCTGGTCGGGGTCGGTGGCGAGGCCGAGC
GGGTCGAATGGGCCACCGGGGTGGAGCTTGTCATCAAATTCC