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Detailed information on CNT30296754


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522474Triticum aestivumSetaria italica14.7421.1685.29102forward
CNT30256420Triticum aestivumAvena sativa39.7440.8684275forward

Expression of CNT30296754

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MAWASEIGRVCLATVVEEEADVHRYVEVDAEDVGPDGGAEADDGVKVDQPLEQRAALVARRNADLEAEQAAKNVGAHPQL*

>peptide 2 (95 aa)
MSTGTSRWMPRTLALTAVQRQTMASRSTNPWSSGQHSSRAETPTLRPSRPPRTLAHTRSFSASIEHCPPWPCAPLPWYGGGTTTGGVGTTTGGWQ*

>peptide 3 (28 aa)
MLRATKMAALDVTVSVCLSGIASALGLGC

>peptide 4 (61 aa)
MIYINKKSTSLFAKSNWLQGFKCESGTVPQLTKMTTKHGSKANLSRRPYVQQYASVNGLGK*

Sequence

>CNT30296754
GAAAAATAATTATTTTGGGCAATTAACTAGAGTAATAATGATTGTGCAGTGATGATATATATCAATAAGAAGAGTACATCGTTGTTTGCCAAAAGCAACT
GGTTACAAGGATTCAAATGTGAAAGTGGAACGGTTCCACAACTCACGAAAATGACAACGAAGCACGGATCGAAAGCAAATCTTAGTCGGCGCCCGTACGT
GCAGCAGTACGCGTCCGTTAATGGCCTGGGCAAGTGAAATCGGACGGGTATGTCTTGCCACAGTGGTTGAGGAGGAGGCTGATGTCCACAGGTACGTCGA
GGTGGATGCCGAGGACGTTGGCCCTGACGGCGGTGCAGAGGCAGACGATGGCGTCAAGGTCGACCAACCCCTGGAGCAGCGGGCAGCACTCGTCGCGCGC
CGAAACGCCGACCTTGAGGCCGAGCAGGCCGCCAAGAACGTTGGCGCACACCCGCAGCTTTAGCGCGTCGATAGAGCACTGCCCGCCGTGGCCGTGCGCT
CCTCTTCCTTGGTACGGCGGCGGAACGACAACGGGCGGCGTCGGCACGACGACTGGAGGCTGGCAATAGGGTCCGCAGCCGTGCGCGGCGACGGAGGAGA
GGACGATGCTCAGGGCGACGAAGATGGCAGCTTTGGATGTCACCGTGAGCGTGTGCTTGAGTGGGATAGCTAGTGCTTTGGGTTTGGGATGC