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Detailed information on CNT30296412


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Triticum aestivumOryza sativa33.9347.3586.84152forward
CNT30438855Triticum aestivumAegilops tauschii100.4583.6498.22450forward
CNT30663481Triticum aestivumTriticum dicoccoides99.5584.9599.78446forward
CNT30104515Triticum aestivumOryza rufipogon33.9330.7786.18152forward
CNT30118046Triticum aestivumOryza nivara33.9338.8786.84152forward

Expression of CNT30296412

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SSLFITQAIQMVPVFHLSLFSRNLISSSSYPIIIYSNQ*

>peptide 2 (54 aa)
MFFKSQLSSFPLEASHMPASVQDPSEAYPSRPSEVDPPYQAEQARREGAIERTCS

Sequence

>CNT30296412
GTCTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGTCTTCCACCTCTCACTCTTCAGCCGGAACCTAATCTCATCCTCATCCTACCCGATCATA
ATATATAGCAACCAGTAAATTTACTCTACCTCGGCTAGAGATATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCC
CAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCATGCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCA
ACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATCGGTCCAGGACCCATCGGAGGCATACCCATCCCGCCCATCGGAGGTGGACCCCCCATAC
CAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGCGTACATGTTCT