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Detailed information on CNT30296302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103845Triticum aestivumOryza rufipogon2527.883.87124forward
CNT30578311Triticum aestivumOryza barthii24.627.2382.79122forward

Expression of CNT30296302

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SSLFITQAIQMVPVFHLSLFSRNLISSSSYPIIIYSNQ*

>peptide 2 (70 aa)
MFFKSQLSSFPLEASHMPASVQDPSEAYPSHPSEAYPSRPLEAYPSRPSEVDPPYQAEQARREGAIERTCS

Sequence

>CNT30296302
GTCTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGTCTTCCACCTCTCACTCTTCAGCCGGAACCTAATCTCATCCTCATCCTACCCGATCATA
ATATATAGCAACCAGTAAATTTACTCTACCTCGGCTAGAGATATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCC
CAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCATGCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCA
ACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATCGGTCCAGGACCCATCGGAGGCATACCCATCCCACCCATCGGAGGCATACCCATCCCGC
CCATTGGAGGCATACCCATCCCGCCCATCGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGCGTACATGTTCT