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Detailed information on CNT30295853


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43206|CATA1_WHEAT, E-value = 3e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678563Triticum aestivumSetaria viridis24.779.0589.16166forward
CNT30520085Triticum aestivumSetaria italica65.4825.4882.27440forward
CNT30640148Triticum aestivumNymphaea colorata32.149.7885.65216forward
CNT30616919Triticum aestivumSesamum indicum22.0245.8282.43148forward
CNT30709260Triticum aestivumGlycine max7.892088.6853forward
CNT30223144Triticum aestivumHordeum vulgare14.8847.17100100forward
CNT30663726Triticum aestivumTriticum dicoccoides51.0441.4899.13343forward
CNT30260467Triticum aestivumBrassica rapa29.3247.2481.22197forward
CNT30228927Triticum aestivumAnanas comosus30.2185.6587.68203forward
CNT3038340Triticum aestivumCucumis melo20.3934.4281.02137forward
CNT30575497Triticum aestivumOryza barthii35.4218.9894.96238forward
CNT30116279Triticum aestivumOryza nivara65.4822.1790.91440forward

Expression of CNT30295853

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LLAAAVEGAGGDGVAGRVLGGLGPRRWRCVSE*

>peptide 2 (51 aa)
MIPGQKASCSFSEKKLSMLRFSTSRPTGCSGTTSSGHVLVTSSGSKSNRSS*

>peptide 3 (38 aa)
MESVRSLVAWLWLVPPTVTASSSSSDLTPQVGFQWNLT*

>peptide 4 (36 aa)
MSSKRKVNMWSDSGWWEKKSRIRQFSWMWVLGLGLSA

Sequence

>CNT30295853
CTTCTCGCGGCGGCCGTTGAGGGTGCGGGAGGGGATGGGGTAGCGGGGCGCGTGCTTGGCGGGTTGGGCCCCAGACGGTGGCGCTGCGTGTCGGAGTAGG
AGAAGATCCTCGTCTGCAGCAGCTTGTCGTCCGAGTAGTACACCCCGGGGACGATGATCCCGGGGCAGAAGGCCAGCTGCTCGTTCTCCGAGAAGAAGTT
GTCGATGTTGCGGTTCAGCACCAGCCGCCCCACGGGCTGCAGCGGCACCACGTCCTCGGGCCACGTCTTGGTCACGTCCAGCGGGTCGAAGTCGAACCGC
TCCTCATAGTCCGGGTCGATGGTCTGGATGTAGAAGGTCCACTCCGGGTAGTTGCCGGCGGCGATGGAGTCGGTGAGGTCCTTGGTGGCGTGGCTGTGGT
TGGTGCCGCCCACCGTGACCGCCTCCTCCTCCAGCAGCGACTTGACGCCGCAGGTGGGCTTCCAGTGGAACTTGACGTAGTGCGCCTTGCCGGCGCGGTT
CACCAGCGTGTAGGTGTTGACGCCGGAGCCGTCCATGTGGCGGTAGTCGGCGGGCACGCCGATGTCGTCGAAGAGGAAGGTGAACATGTGGAGCGACTCC
GGGTGGTGGGAGAAGAAGTCGAGGATCCGCCAGTTCTCCTGGATGTGGGTCTTGGGGTTGGGCTTGAGCGCG