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Detailed information on CNT30295408


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 8e-95

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Triticum aestivumOryza sativa50.6544.9991.4314forward
CNT3098615Triticum aestivumSolanum tuberosum39.1947.3790.12243forward
CNT3041219Triticum aestivumChlamydomonas reinhardtii35.3238.4288.58219forward
CNT30119652Triticum aestivumCitrus clementina35.8129.1382.88222forward
CNT30575848Triticum aestivumOryza barthii55.6538.3890.72345forward
CNT30593783Triticum aestivumEragrostis curvula31.2936.7489.18194forward

Expression of CNT30295408

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

>peptide 2 (32 aa)
MAGVTLGHHGGRLEGAVGDLSDRELLMVSLLS*

>peptide 3 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

>peptide 4 (30 aa)
MGVGKRDNMHIDQGAKQVQTYHRFIQHNRL*

Sequence

>CNT30295408
CAGATACTGAAACAGGGAAATGGTGATGGACAGCAGCAGAGGCTATGGGTGTAGGCAAACGAGATAACATGCATATTGACCAAGGTGCGAAGCAGGTTCA
AACATACCACAGGTTCATACAACACAACAGGTTGTAAACCAAACACCACACAGCAAACATTCAAACAGGCAGACAACAGATAAAGCCGCTTGGGCAGATC
ACAGGATAGTAGTAGACGAAGGCACGCTTAGCGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCA
TGCACACGGCCCTCTGGACCTTGGCGAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCAC
AAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTGGGCACAACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTG
CCATGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTG
AGATCACTGGGGCGTAGGAG