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Detailed information on CNT30295231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183781Triticum aestivumSecale cereale100.3877.1697.34527forward
CNT30392448Triticum aestivumTriticum turgidum95.0595.9698.2499forward
CNT30258377Triticum aestivumAvena sativa92.3871.1184.33485forward
CNT30662351Triticum aestivumTriticum dicoccoides10098.8799.62525forward
CNT30136185Triticum aestivumLolium perenne91.0572.5386.4478forward
CNT30352984Triticum aestivumEragrostis tef3632.3186.24189forward

Expression of CNT30295231

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LCSRVATPTRRSVHPKCLSLFITQAIQMVPVFHLSFFSWNLISSSSYPIIIYSNQ*

>peptide 2 (41 aa)
VYVHGWQHQHGGVYTQNVLVFLSHKLYKWYQSSTSHSSAGT*

>peptide 3 (32 aa)
MFFKSQLSSFPLEASHMPASDQDPSEAYPSRP*

Sequence

>CNT30295231
GTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACACCCAAAATGTCTTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGTCTTCCA
CCTCTCATTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACCCGATCATAATATATAGCAACCAGTAAATTTACTCTACCTCGGCTAGAAATATTGCT
CGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCATGCTCCC
TCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATCGGACCA
GGACCCATCGGAGGCATACCCATCCCGCCCATAGGAGGCATACCCATGCCGCCCATAGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAG
GGAGCAATTGAGCGTACATGTTCTG