Detailed information on CNT3029428


BLAST search results

BLAST vs Swiss-Prot:
sp|P29684|RBS_HEVBR, E-value = 8e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514551Theobroma cacaoJuglans regia36.0215.3889.4776forward
CNT30508075Theobroma cacaoNicotiana attenuata24.1711.0990.251forward
CNT3091432Theobroma cacaoSolanum tuberosum24.1719.3990.251forward

Expression of CNT3029428

Peptides detected in this lncRNA

>peptide 1 (45 aa)
RNPFSAKKVFNFLCQLFWRDQGGKQFQATGYSFELPACTGLFHHC*

>peptide 2 (61 aa)
GIHFLRRRYSTSFANCSGEIREENNFKQQVIPSNYLHALDSSTIASYRGNVIVEFTGHWEG*

>peptide 3 (68 aa)
EESIFCEEGIQLPLPTVLERSGRKTISSNRLFLRITCMHWTLPPLLAIEVMSLLSLRVTGKAEVDLSL*

Sequence

>CNT3029428
GAGGAATCCATTTTCTGCGAAGAAGGTATTCAACTTCCTTTGCCAACTGTTCTGGAGAGATCAGGGAGGAAAACAATTTCAAGCAACAGGTTATTCCTTC
GAATTACCTGCATGCACTGGACTCTTCCACCATTGCTAGCTATAGAGGTAATGTCATTGTTGAGTTTACGGGTCACTGGGAAGGCTGAGGTTGATTTAAG
CCTGTGAAAGG