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Detailed information on CNT30294278


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672379Triticum aestivumSetaria viridis73.3270.3888.61316forward
CNT30520774Triticum aestivumSetaria italica74.4828.5390.65321forward
CNT30516978Triticum aestivumJuglans regia35.7322.5881.17154forward
CNT30712288Triticum aestivumGlycine max32.9524.6182.39142forward
CNT30182270Triticum aestivumSecale cereale100.9378.894.25435forward
CNT30222663Triticum aestivumHordeum vulgare63.3453.9589.01273forward
CNT30437582Triticum aestivumAegilops tauschii37.8249.39100163forward
CNT30261201Triticum aestivumBrassica rapa26.2212.7382.3113forward
CNT304795Triticum aestivumZea mays70.5367.2689.8304forward
CNT30344815Triticum aestivumEragrostis tef56.8456.9886.12245forward
CNT30620323Triticum aestivumCajanus cajan30.867.4481.2133forward
CNT30570425Triticum aestivumVitis vinifera22.045.4783.1695forward
CNT30104607Triticum aestivumOryza rufipogon24.8329.8193.46107forward
CNT30578384Triticum aestivumOryza barthii30.8633.9394.74133forward
CNT30557050Triticum aestivumPanicum hallii38.5243.6892.77166forward
CNT30112090Triticum aestivumFicus carica27.615.8186.55119forward

Expression of CNT30294278

Peptides detected in this lncRNA

>peptide 1 (37 aa)
EEYVSSFIHRLFQPTTKKRSITSSAVVHPSYMHANNK*

>peptide 2 (77 aa)
MPIINNLLEEVWEVEHVEEEVGPDGAGDAAEEEASGELGPAFGGLQLVGLLLAAGEREGGRGGSRGRGRPRCHGGAG*

>peptide 3 (86 aa)
MAPETPPKKKPPVNWDQPSAVCSLSASFLRPVSVRAGAEVAVGEADLDATEERADGGAVRGKVGEVPRDEGAGRDGRLQAADEWVAV

>peptide 4 (39 aa)
MPRRSGLTAVRYAGRLERYHATRGLDVTGVSRLPMNGSPL

Sequence

>CNT30294278
TGAGGAATACGTAAGTTCATTTATACATAGACTCTTTCAACCAACCACCAAGAAGAGATCGATCACATCATCTGCAGTTGTGCACCCATCGTACATGCAT
GCCAATAATAAATAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGATGGCGCCGGAGACGCCGCCGAAGAAGAAGCC
TCCGGTGAACTGGGACCAGCCTTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGGGCGGGCGCGGAGGTAGCCGTGGGCGAG
GCCGACCTCGATGCCACGGAGGAGCGGGCTGACGGCGGTGCGGTACGCGGGAAGGTTGGAGAGGTACCACGCGACGAGGGGGCTGGACGTGACGGGCGTC
TCCAGGCTGCCGATGAATGGGTCGCCGTTGA