« Back to Triticum aestivum search


Detailed information on CNT30294119


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Triticum aestivumSetaria viridis99.636796.69272forward
CNT30524663Triticum aestivumSetaria italica83.5239.1897.81228reverse complement
CNT30549212Triticum aestivumIpomoea triloba100.379.0895.26274reverse complement
CNT30272552Triticum aestivumChenopodium quinoa82.4217.8996.89225reverse complement
CNT30730494Triticum aestivumCorchorus capsularis97.830.3495.88267reverse complement
CNT30225247Triticum aestivumHordeum vulgare97.4463.9495.11266forward
CNT30384830Triticum aestivumTriticum turgidum99.6346.3498.16272reverse complement
CNT30569398Triticum aestivumActinidia chinensis100.3714.0295.62274reverse complement
CNT30442196Triticum aestivumAegilops tauschii99.6332.0898.9272forward
CNT30660220Triticum aestivumTriticum dicoccoides98.979.6598.15270forward
CNT303548Triticum aestivumZea mays99.6319.198.16272forward
CNT30205642Triticum aestivumHelianthus annuus100.3726.4795.99274reverse complement
CNT30688674Triticum aestivumTriticum urartu99.6320.6598.9272reverse complement
CNT30720843Triticum aestivumTriticum spelta23.0829.398.4163reverse complement
CNT30347837Triticum aestivumEragrostis tef99.6335.2898.53272forward
CNT30620564Triticum aestivumCajanus cajan99.635.2695.22272forward
CNT30410880Triticum aestivumPapaver somniferum100.3730.2495.26274reverse complement
CNT3036965Triticum aestivumCucumis melo99.6337.3695.96272reverse complement
CNT30331560Triticum aestivumDioscorea rotundata59.3432.0894.44162reverse complement
CNT30104374Triticum aestivumOryza rufipogon99.6320.4897.43272forward
CNT30604015Triticum aestivumOryza punctata99.6356.3190.81272forward
CNT30174498Triticum aestivumVigna angularis75.8240.9993.24207reverse complement
CNT30551087Triticum aestivumOryza brachyantha97.0788.9389.43265forward

Expression of CNT30294119

Peptides detected in this lncRNA

>peptide 1 (44 aa)
RRCLGCDTGGSREVGGESTHLGVGLLLICFQQLSSPHLATQRLP*

>peptide 2 (56 aa)
MLSAVILSALGYPAFTVGMITGTPEVNPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 3 (61 aa)
VAVSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGESFPVLSY*

Sequence

>CNT30294119
CGTCGCTGTCTCGGCTGTGATACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTAT
CCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCATGATAACTGGTACACCAGAGGTGAATCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCT
CAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCT