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Detailed information on CNT30293970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222858Triticum aestivumHordeum vulgare56.2871.692.29363forward
CNT30438687Triticum aestivumAegilops tauschii53.18100100343forward

Expression of CNT30293970

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MMDLAAAAGAAAAGAALALGGAAAAVSSAARHLRGWVGASEMERL*

>peptide 2 (65 aa)
MMHARHGACMIDDGSSSCSRSSRSWCRTCTGRCRSRSFLRSKTSSRLGWSFGDGEALNGYELRVCF

>peptide 3 (50 aa)
HTQLRAVIFTRIKHYGPDWILVSQSNTPVNLPFSIHRFLPGVADDIHLVK*

Sequence

>CNT30293970
CTCATACTCAACTTCGGGCAGTAATATTCACACGTATCAAACACTACGGCCCTGATTGGATTCTCGTTTCACAGAGCAATACCCCTGTAAATTTACCCTT
CTCCATCCATCGTTTTTTACCAGGTGTGGCCGATGATATACACCTTGTAAAATAAATACAGGTGTATAAAGATACACCGATTCCAAGGCGGTGCATACAT
TGCTTCAAGAGAGCATTCAGCTGGTCTATTAACAACCCATGCACGTCGCAAGTTGATAGTAAACACGGGCCAGAAGCTGGTCTATAACACAAACACATGT
ATAGTTAATCAAGGGAGGTTTTATTTAGGGGGGCCTGTTTACAATCATGGCATGGCACCTGACTGCTGATGCAGGTCAGGTGCGTACATAAAGGCCCTCG
ATCAGGTTGCGGTTACATGGTATGGTAGTAGTAGATCGATATGATCGATGATGCACGCACGGCACGGTGCATGCATGATCGATGATGGATCTAGCAGCTG
CAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGCGGTGCCGCAGCCGCAGTTTCCTCCGCAGCAAGACATCTTCGAGGTTGGGTTGGAGCTTC
GGAGATGGAGAGGCTTTGAATGGCTATGAGCTTCGTGTGTGCTTC