Detailed information on CNT30293673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556103Triticum aestivumOryza glaberrima6.2924.9296.0576forward

Expression of CNT30293673

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLTIESNDQSICTPNSLSYKREVQMPTGCFQVTGILSLQLVDMCLRSR*

>peptide 2 (38 aa)
MGSQSITCSPSRVTISRYVLLILSLINVKSKCLLAAFR*

>peptide 3 (74 aa)
MELRLRWRRHCLPQRFQDAELGPGRRRGRHYLWWRLQDEDLGPGWRQGRRNLSQRRQRRTCSGLWGLGGGGLEG*

>peptide 4 (73 aa)
MEAGTTQLVPASSAEDMQRVVGFGWRWVRGMTGGSNGNSGRPGRRGCSAGVRVPGRRLQSVGCIIWEGGGKTD*

>peptide 5 (32 aa)
MIKFGISCCYNGISRDREVCTRMLTTLFCFLS*

Sequence

>CNT30293673
TAGGAACGGAGGGAGTATATTTGGAACTGATCTTAATTTACTAGATAAATCAATTCCGAAATCCAATAAACTTCTATAATTTCTATAATTTCCAAGAATA
GGAGTATTGCTGGTTAATCAATTGATTTACATTAATATCTTAAAAGGGGACCGCACGCATGTCCTGATGCTAAATCTTTTTAGAAAGGAAGGGTTTATGT
AATTTTGGTAGGATAAAAAATGTAACCTTAGTATTACCTAGAGCTAGGATATTTGAGTAGATTATTTTAATTTTTGTGCTCATATGTGAGATCATGATAA
AATTTGGAATATCATGTTGCTATAACGGAATCAGTCGGGATCGTGAAGTCTGCACCAGAATGTTGACCACCCTTTTTTGTTTTTTAAGTTAAGGAATTTA
CAACAAGTCTCTTGCAAAAATAACTGTCCTATCCCTTTCTACAATCTCTCTATATCTTTGTTAGATAAGGTAAGTATTGCATAATAGTTCGGTTTTCCGT
GATTTTTTTCATTCCTCTGTGTAATAGCCTAATATGGGTTCACAATCAATAACATGCTCACCATCGAGAGTAACGATCAGTCGATATGTACTCCTAATTC
TCTCTCTTATAAACGTGAAGTCCAAATGCCTACTGGCTGCTTTCAGGTGACTGGAATTTTGAGCCTTCAGCTTGTCGATATGTGCTTGAGAAGTAGGTAA
GATGGAGCTAAGGCTGAGATGGAGGCGACACTGCCTGCCGCAACGATTCCAAGATGCTGAGCTAGGACCTGGACGGAGGCGGGGACGACACTACTTGTGG
TGGCGTCTCCAAGATGAAGATCTAGGACCTGGATGGAGGCAGGGACGACGCAACTTGTCCCAGCGTCGTCAGCGGAGGACATGCAGCGGGTTGTGGGGTT
TGGGTGGAGGTGGGTTAGAGGGATGACCGGTGGCAGCAACGGCAACTCGGGTAGACCAGGGCGGCGAGGCTGCAGTGCGGGCGTTCGTGTGCCAGGAAGA
AGGTTACAGTCCGTTGGATGCATAATATGGGAGGGCGGAGGAAAAACTGACTGAAGAAAAAATCTTTTCGAGCCTGAAATAGTCGCTCTCAATTGTAACC
ATAGAAGCTTGGCACGTTTTGAAGAACCAGAGTTGCCTGTGTGTTCTAGAGTTTTTTCTTGCAACTTTAAGTCCTTTGTTTGCTCTATCTTGAAGACCTT
TGTTCTAC