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Detailed information on CNT30293259


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H49|RR3_WHEAT, E-value = 4e-135

BLAST vs NONCODE:
NONORUT000960, E-value = 9e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Triticum aestivumOryza sativa83.8728.2391.951180forward
CNT30503443Triticum aestivumNicotiana attenuata16.6369.2380.77234forward
CNT30185636Triticum aestivumSecale cereale56.2951.198.74792forward
CNT3086712Triticum aestivumVigna radiata15.7874.580.63222forward
CNT30555950Triticum aestivumOryza glaberrima71.4366.3491.341005forward
CNT30243771Triticum aestivumAvena sativa63.8977.9793.66899forward
CNT30447455Triticum aestivumSaccharum spontaneum50.5399.0392.41711forward
CNT30134355Triticum aestivumLolium perenne42.6423.8393600forward
CNT3018340Triticum aestivumZea mays22.4623.7292.41316forward
CNT30689030Triticum aestivumTriticum urartu97.0930.1798.981366forward
CNT30371107Triticum aestivumOryza glumipatula29.9910091.47422forward
CNT30585636Triticum aestivumEchinochloa crusgalli47.3311.689.79666forward
CNT30604560Triticum aestivumOryza punctata55.0876.9693.03775forward
CNT30336889Triticum aestivumCynara cardunculus24.6640.4986.46347forward

Expression of CNT30293259

Peptides detected in this lncRNA

>peptide 1 (39 aa)
YFDFNLLFQCKRMKEILSFQKEKPGIFFIFHTPFRVLYL*

>peptide 2 (58 aa)
MDSARAISFPPRRPAIFTFTPLISAFLVNSMPFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 3 (52 aa)
MTWIVSISFWISICVITSELEPESIFLLCVITSELESDSIFLFEPFFLFFCI*

>peptide 4 (59 aa)
MIYQFSLNLIERGIISSFAGILGKKSLVIFYSINGQNPKTRLLILRLRISKFLHLILHR*

Sequence

>CNT30293259
ATTATTTTGATTTCAATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTCTTTCCAAAAAGAAAAACCGGGCATTTTTTTTATCTTCCATACCCC
TTTTAGGGTTCTATATCTCTAATCGAATAAATTGACTTCGTATGGGCATTTTACTGGCAGCTATGGAGATAGCTGCTCTAGCTACAGTTTCAGATACTCC
CCCCATTTCATAAAGTATACGACCAGGTTTAACAACGGATACCCAATATTTGGGGGACCCCTTTCCCGAGCCCATACGTGTTTCTGTGGGTCTTAGTGTA
ACCGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGTCCTGCTTCTATCTGTCTCGCCGTGATCC
AAGCGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTTGGCAAGATTTTCCTTTCATTCTTCCTCTATGTTGTTTGCGAAATCT
GGTTCTTTTGGGGTTATACATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTATAATTTCTTCTTTTGCAGGGATTTT
AGGAAAAAAGTCTCTTGTCATTTTTTATTCTATCAATGGACAGAATCCGAAGACAAGATTACTTATTCTTCGTCTACGAATATCCAAATTTTTACACCTA
ATACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCCTTTTTAATGGATTCGGCGCGTGC
AATTTCTTTTCCTCCGAGACGACCCGCAATTTTTACTTTTACTCCCCTTATATCTGCTTTTTTAGTTAATTCAATGCCTTTTTTCATTGCCTTTCGGAAT
GAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGCTGTCTATAAGGTTCTTTAACTTTTTTGATAGAAATATTAAATCTCTGGT
TTACAGAGTTAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTCTTTAATAAATTTGGGAATCCAATATGGATTATGACGTGGAT
CGTATCGATTTCTTTTTGGATTTCTATATGTGTAATTACTTCGGAACTTGAACCTGAGTCCATTTTTCTATTATGTGTAATTACTTCGGAACTTGAGTCT
GATTCTATTTTTCTATTTGAGCCCTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAATCCCTTATTTTTTTTATCTTCCTGTAGACCTTCCGAATAA
TTTTTTGGTTGTGCGAACCAAAAGGAATGGTGTTTTTGGGTTGTACCAAGTCTGAAACCGAGTGGATTTATTTTTTGTCCCATATTTTTCTATTCTATAT
TTTTTTA