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Detailed information on CNT30293057


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690617Triticum aestivumOryza sativa24.9717.4986.67210forward
CNT30522968Triticum aestivumSetaria italica24.9715.6289.05210forward
CNT30437732Triticum aestivumAegilops tauschii34.3642.0793.43289forward
CNT30247924Triticum aestivumAvena sativa26.9914.789.87227forward
CNT30455685Triticum aestivumSaccharum spontaneum25.2114.5688.21212forward
CNT30135479Triticum aestivumLolium perenne25.815.5891.71217forward
CNT3014485Triticum aestivumZea mays11.7747.688.8999forward
CNT30339116Triticum aestivumEragrostis tef21.8825.8184.78184forward
CNT30364121Triticum aestivumSorghum bicolor20.6926.4487.93174forward
CNT3099938Triticum aestivumOryza rufipogon24.9719.8186.67210forward
CNT30580297Triticum aestivumEchinochloa crusgalli24.9715.4187.62210forward

Expression of CNT30293057

Peptides detected in this lncRNA

>peptide 1 (48 aa)
YLHYHITLAAPTGAGDFEQKIRRQKELKKYQGRTKELCCRISYPPRLL*

>peptide 2 (43 aa)
MEPRRRRPCRPEDTRPAEGRRRPGEAARTRPAHHRKRHRPGPG*

>peptide 3 (34 aa)
MSPMRSPPSAPPRSPAPRPIPMPLFFGGFTACCW*

Sequence

>CNT30293057
ATATTTACATTACCATATCACACTAGCTGCGCCCACAGGCGCCGGCGATTTTGAGCAGAAAATCCGAAGGCAAAAAGAACTGAAGAAATACCAAGGACGT
ACAAAAGAACTGTGCTGCCGCATATCTTATCCTCCTCGACTGCTCTAGAAGTCGAAGCCACCGCCGTCGTCGAACCCGGCGTCGTAGCCGGCGTCATACC
CTCCGGCGGAGTCGGAGATCATGTCGCCGATGAGGAGCCCGCCGAGCGCGCCTCCGAGGAGCCCCGCGCCCAGGCCCATCCCCATGCCGCTCTTCTTCGG
CGGCTTCACGGCCTGCTGCTGGTAGCCGTATCCGGCGGGCTGCTGCGGTGGGTACCCGTAGCCGTACTGCGGGGGCGGGGCGCCGTAGGGAGCTCCGGTG
CTGGGTCCCGCGGCGGCTGCTGGGTAGGCCGTCACTGGCTCGCCTGCCTTCGCCGGCTTTCCTGACGGACCAACGGGTGGGTAGCCGGCTGGTGCGGGGT
AGGCGGATGGAGCCCCGTAGGCGTCGGCCTTGCCGGCCGGAGGATACGCGCCCTGCGGAGGGTAGGCGGCGGCCGGGGGAGGCTGCGCGTACGCGGCCTG
CGCACCACCGTAAGCGCCACCGGCCTGGCCCTGGGTGACCTCACCAAGCTTGTACGAGAAGTTGAGGACCCCCTGGGGCTTCCCGGACCCGATCTTGCGG
ACCTGGTAGGCGACGAACTTGACGGGCACAGGGCCATCAGGGGCGCCAGAGAGCAACTCAGACAGCGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGA
GGGCGCGCTCGGCGCGGAGCAGCACGTGGACGGACCCCGCG