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Detailed information on CNT30292924


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 2e-33

BLAST vs NONCODE:
NONGMAT000269, E-value = 6e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379403Triticum aestivumManihot esculenta21.7120.8283.76117forward
CNT30606042Triticum aestivumGossypium raimondii22.4539.6785.12121forward
CNT30360078Triticum aestivumLactuca sativa22.6315.486.89122forward
CNT3052765Triticum aestivumAmborella trichopoda22.4523.8289.26121forward

Expression of CNT30292924

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCLSTLKM*

Sequence

>CNT30292924
CAAGGGACCACGATAATTCATTGATTTAGAAAATACGACTCATTTTACAATGTTTGTATAGGGGGGTCTAACCCCCTGCGATTGTTGACACACGAACAAA
CGAAACCAAACTGACAAGAGACTCGGTGGGCGGCAGGCAATCTAAGAGGAGGTAAACTTGGTGACGGTGGGCTTCTTGTTGTAGCGCGCGAGCTTGGCCG
ACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCAGGGTGGACCTGCTTGAGCAC
CTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTGGCCTTCTTCTTCTTCTTGTCGGCGCCGCCGTCCTTGCCGGGCACGCGCTTCTCGGCCTTG
GGCTTCTTCTCCGTCTCCACCGGCTTCTTCTCCGCGGCGGGCTTCTTCTCGGCCTTGGGCGCCATGGCGGATTCGGCGGGAAGGAGACGAGGGATCGGAT
TGGGGAAGTTTGCGGCGCGCGGGGAGGATTGGAGGTTTG