« Back to Triticum aestivum search


Detailed information on CNT30292655


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H61|RR4_WHEAT, E-value = 4e-137

BLAST vs NONCODE:
NONORUT000576, E-value = 1e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Triticum aestivumOryza sativa25.079.1195.27507forward
CNT30185413Triticum aestivumSecale cereale83.4388.0997.631687forward
CNT30222778Triticum aestivumHordeum vulgare19.7825.6194400forward
CNT30237795Triticum aestivumBrassica oleracea23.6412.4682.85478forward
CNT30556045Triticum aestivumOryza glaberrima25.1215.5695.47508forward
CNT30468477Triticum aestivumSaccharum spontaneum9.9489.3392.04201forward
CNT30655373Triticum aestivumRosa chinensis23.6911.4485.18479forward
CNT30626868Triticum aestivumDaucus carota12.4148.8389.64251forward
CNT30351181Triticum aestivumEragrostis tef8.9535.8490.06181forward
CNT30362312Triticum aestivumSorghum bicolor10.8870.5191.36220reverse complement
CNT30596972Triticum aestivumOryza meridionalis15.2824.782.2309forward
CNT30150577Triticum aestivumBrachypodium distachyon4.336.2595.487reverse complement
CNT30116859Triticum aestivumOryza nivara20.5299.5295.66415forward
CNT30114189Triticum aestivumFicus carica23.6412.1484.52478forward

Expression of CNT30292655

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVEAIPNRKRILSKRISSNCSKTWPVDLFAFPAICTYLSNCRSVRP*

>peptide 2 (46 aa)
MKYLTKTGFHSTFLFLNNNLCYQLFRVFKVILLIVSYPIFDFDSMV*

>peptide 3 (39 aa)
MKTQFLFFLKTNTILLLFPRIEFFFKITSGFRCFSSESW*

>peptide 4 (39 aa)
MLYSKSICFKWIREIWIFRSAQIVSFSFCLDTKRYEIFD*

>peptide 5 (32 aa)
MGKYELMVMVLGRFSSGKGEGEENSMNLSFFR*

>peptide 6 (34 aa)
IEEVLSMKFPFTRDLGIIPNPFYIELFSFLHKIT*

Sequence

>CNT30292655
AATTGAGGAGGTCTTATCAATGAAATTTCCATTTACACGGGATCTAGGCATAATTCCCAACCCATTCTATATAGAGTTGTTTTCATTCCTTCACAAAATA
ACATAAAAACAAACACATTCGATTCTTATAATTATAAATAAATTGATCCATATGCTCTACTCTAAATCCATATGCTTTAAATGGATAAGAGAGATATGGA
TTTTCCGCTCAGCTCAAATTGTATCCTTTTCCTTCTGCTTGGACACGAAGAGATATGAAATATTTGACTAAGACTGGATTTCATTCCACTTTCCTATTTC
TGAACAACAACTTATGTTATCAACTATTTCGTGTTTTCAAAGTTATTTTATTAATTGTCTCATACCCTATTTTTGATTTCGATAGTATGGTGTAGCGTAT
CTTATGCAAACGGAATTCTAAGGTTTTTTTATTTTATTATGCAATAAGAAGAATTCTTCCATTTTCTTTTTCTTTAGTTGCGGGAAAACCCAAATTAAAA
CTTTTATTTTATAGCGAGCGCAATTTCTAGTAAAAAATCCTGTATCCTTCCACTTAGATCAAAAGGAATTTTTCCAATAGAACTATGGAACCCCCGAGTG
GTTGCGGTTGTACCTGTACTGCAGGAATAAGAAAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGTTATGTAGGAGAGATGGCCGAGCGGTTCAAG
GCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTTTATTAATTCATCAACGTTAAGGATCACAATGTA
TCAAATCAAATAACAATTTTTTCCAGCAATAATATAATATCTTATATTATCTTATTTTGATTTAATAGAAATTAGAAATTCTCTATAGCAAATTACTGTG
GTATGTAAAATACACATAGAGGAAAAAAGAAAAAAGGATCCTAATCCTAGGGTTAATCAATTTTAGCTAGTTGATGGGAAAATACGAATTAATGGTAATG
GTCTTAGGGCGATTTAGTTCAGGGAAAGGGGAAGGGGAAGAAAATTCTATGAACCTTTCCTTTTTTCGTTAAGTTCAAGTCTGACGAGAGTAATATTCTA
CAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCTAGGATTTTATTTACTAGTCCTTTATATTCCAACGTGTCAATCGCCAAATGCTTTGG
CAATTTCCCCGGGTCCGATGAAGCAATATAATTTTGAACCAGACCTTTTGATCTTTGGTTATCTTTCGTAGTAATAATATCTCTGGGTTTGCAACGAAAA
CTTGGTATATTGACTATACGACCATTAACTAAAATATGTCTATGGTTGACTAATTGGCGGGCCCCAGGAATGGTTGAAGCCATACCCAATCGAAAAAGGA
TATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGGCCTGTTGACCTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGT
CAGACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGCTCCTTTTTCCCAGAATTGAATTTTTTTTTAAGATTACTTCCGGAT
TTAGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAACGAGGTCCTCGATAACGGGACATGAAGATTCCTTTTTTATTTT
ATTGAAATTTCATTTTACACAATTAATTTCATTGTATTTACATTACAGAATACATCGAAATTAAAACTGAATTAAACTACAGGATAAACAGAGTAAAATC
AACTAAAGTACCCCAAAAAATGGAATTTCATCAAAATATTTATTTTTTTTATATATATTATTTATTTTATTGTTTTGTATCTAGCAAAATTGTAAGGTAA
AAAACATAAAAGATCCTGGATTCTCCATTTAATTCGGAAAAAAAGAGATTCTTGTTCGTAGAACATCGATAGAGAAAAAAAAGCCGACTATCGGATTTGA
ACCGATGACCCTCGCATTACAA