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Detailed information on CNT30292481


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073023Triticum aestivumQuercus suber15.1128.4685.5376reverse complement
CNT30190568Triticum aestivumSecale cereale40.167.0995.54202reverse complement
CNT30437581Triticum aestivumAegilops tauschii38.5763.6196.91194forward
CNT30249088Triticum aestivumAvena sativa26.0424.3583.97131forward
CNT30661953Triticum aestivumTriticum dicoccoides60.2452.24100303forward
CNT30682197Triticum aestivumTriticum urartu49.962.9193.63251forward
CNT30148757Triticum aestivumBrachypodium distachyon28.8323.6282.76145forward

Expression of CNT30292481

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAVHLLCSCWQVLTYIQRPSIRWRYMVSRL*

>peptide 2 (29 aa)
MHGSAPALLMLAGAYIHTKTLDQVALHGK*

>peptide 3 (83 aa)
MIDLAAAAGAAAAGAALALGTYALWVAVAETRRVAPAASTSGYMLQPPQPLPHLQALPQPQFPPQQDILEVAWDWMEALIGVG*

>peptide 4 (87 aa)
MTDDRSSSCSRSSRSWCRTCTGDVRLVGGGGGDEEGGAGGLNLRVHVAAAAAVAALAGAAAAAVSSAARHPRGCLGLDGSFDWCWLGA

Sequence

>CNT30292481
AGAGAGCATTCAGCTGGTCTAGTAACAACCCAGGCACCTCGCAAGTTGATAGTACAAACACAAGTATAGGTTAAACCACGGGAGATTTTATTTAGGGGTC
GGTTTACATGCATGGCAGTGCACCTGCTCTGCTCATGCTGGCAGGTGCTTACATACATACAAAGACCCTCGATCAGGTGGCGTTACATGGTAAGTAGATT
GTAGATAGATCATAGATATGATGCGCGCGGTGCATGCATGACCGATGATAGATCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACT
GGGGACGTACGCCTTGTGGGTGGCGGTGGCGGAGACGAGGAGGGTGGCGCCGGCGGCCTCAACCTCCGGGTACATGTTGCAGCCGCCGCAGCCGTTGCCG
CACTTGCAGGCGCTGCCGCAGCCGCAGTTTCCTCCGCAGCAAGACATCCTCGAGGTTGCTTGGGATTGGATGGAAGCTTTGATTGGTGTTGGCTAGGAGC
TTC