Detailed information on CNT30292293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672983Triticum aestivumSetaria viridis36.4819.2285.3989forward
CNT30222081Triticum aestivumHordeum vulgare49.1840.8289.17120forward
CNT30582613Triticum aestivumEchinochloa crusgalli36.4818.1684.2789forward
CNT30115596Triticum aestivumOryza nivara45.4951.6386.49111forward

Expression of CNT30292293

Peptides detected in this lncRNA

>peptide 1 (80 aa)
PWARLTSMPRMETRRGLLVSEAPDMPRGLEHTKPLFITWLAIGGAYAVAISISFNSHTHNSALPAATNGWMCYSKKICQDG

>peptide 2 (79 aa)
VGEADLDATDGDEAGPPGERSAGHAPRLGAHQAALHHLARHRRSICCGHLDLLQLPHAQLCSACSYKWMDVLQQEDLSGW

>peptide 3 (35 aa)
MLWPSRSPSTPTRTTLLCLQLQMDGCVTARRFVRMA

Sequence

>CNT30292293
CCGTGGGCGAGGCTGACCTCGATGCCACGGATGGAGACGAGGCGGGGCCTCCTGGTGAGCGAAGCGCCGGACATGCCCCGCGGCTTGGAGCACACCAAGC
CGCTCTTCATCACCTGGCTCGCCATCGGAGGAGCATATGCTGTGGCCATCTCGATCTCCTTCAACTCCCACACGCACAACTCTGCTCTGCCTGCAGCTAC
AAATGGATGGATGTGTTACAGCAAGAAGATTTGTCAGGATGGCA