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Detailed information on CNT30291823


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30131432Triticum aestivumLolium perenne69.2625.6283.41205forward
CNT30349655Triticum aestivumEragrostis tef47.9718.0283.1142forward
CNT30370236Triticum aestivumOryza glumipatula29.055.5787.2186forward

Expression of CNT30291823

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RRGARRRAGRPSRPSGWPSFRRPAPARRTSRGSWTRR*

>peptide 2 (37 aa)
MDAPVSAPPAMVLAPTRRPVSSGPNPGAELLGSRMAA*

>peptide 3 (97 aa)
HGEGPAGERADPVDPVVGPVSGGQRRPEGPRGVHGRAGERAAGDGVGTDEEAGEQRAEPWRGALGVEDGGVDGEEQREGEDDLRHHALDRAHARRQRV

Sequence

>CNT30291823
CACGGCGAGGGGCCCGCCGGCGAGCGGGCCGACCCAGTAGACCCAGTGGTTGGCCCAGTTTCCGGAGGCCAGCGCCGGCCCGAAGGACCTCGCGGGGTTC
ATGGACGCGCCGGTGAGCGCGCCGCCGGCGATGGTGTTGGCACCGACGAGGAGGCCGGTGAGCAGCGGGCCGAACCCTGGCGCGGAGCTCTTGGGGTCGA
GGATGGCGGCGTAGATGGTGAAGAGCAGCGTGAAGGTGAAGACGACCTCCGCCACCACGCCCTGGATCGGGCCCACGCCCGCCGCCAGCGCGTGCA