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Detailed information on CNT3029174


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640852Theobroma cacaoNymphaea colorata13.2638.3384.96133forward
CNT30273043Theobroma cacaoChenopodium quinoa21.738.7383.49218forward
CNT30381337Theobroma cacaoManihot esculenta25.6221.285.99257forward
CNT30708793Theobroma cacaoGlycine max16.2551.5880.37163forward
CNT30234855Theobroma cacaoBrassica oleracea8.6729.185.0687forward
CNT30261311Theobroma cacaoBrassica rapa11.8631.2383.19119forward
CNT30216367Theobroma cacaoKalanchoe fedtschenkoi9.2725.6983.8793forward
CNT30683741Theobroma cacaoTriticum urartu12.8629.7982.95129forward
CNT30365475Theobroma cacaoSorghum bicolor16.0520.380.12161forward
CNT3036858Theobroma cacaoCucumis melo18.1531.9379.12182forward

Expression of CNT3029174

Peptides detected in this lncRNA

>peptide 1 (46 aa)
QAASLTAKADGPLGMLTTVRLANQKRLVLNKIAFFFSLFLTLSKYE*

>peptide 2 (42 aa)
SCFFNCQGRWAVGNAHNRTPGQSKKASVKQDCFFFFPLFNTI*

>peptide 3 (34 aa)
MQWFSTSRGKKGKRTSNGVSYIVQKLIHKSSNII*

>peptide 4 (78 aa)
MYSPRPGADTRSVRYAWRLASVFSRPIEASLFPHVAFDSSMAKIPRPGDAMVFYIQRKERKTHVKWCVLHSSETHSQK*

Sequence

>CNT3029174
CAAGCTGCTTCTTTAACTGCCAAGGCAGATGGGCCGTTGGGAATGCTCACAACCGTACGCCTGGCCAATCAAAAAAGGCTAGTGTTAAACAAGATTGCTT
TTTTTTTTTCCCTCTTTTTAACACTATCTAAATATGAGTGAGAATTTATCAAAAAACTGGGAGTACCATTTGGCGAAACGAGCACCCTGCTGGTAGTAGG
CAGCTGTGCGGGAGGAAAGACCGTCAAGGCCCTGGCACCAGGACTCGTTGTTGGAACCAGGGAGGGGTACCAAACCCTGCATTTATCATCATCGATTAAC
CAGTGTTGGGACAATGTTTTGCTCAACAAGAACATCAACCATCTTTTTTCCATCGGTGGTAGATTGGTAGAGAGTCTCCTCGAAAAGGATAGCTCCAGAG
ATGTACTCGCCGAGGCCAGGGGCTGACACCAGAAGCGTACGGTATGCTTGGCGGTTAGCCTCAGTGTTCTCTAGACCGATTGAGGCAAGTCTCTTCCCAC
ATGTAGCATTTGATTCGTCCATGGCCAAAATACCACGGCCTGGGGATGCAATGGTTTTCTACATCCAGAGGAAAGAAAGGAAAACGCACGTCAAATGGTG
TGTCCTACATAGTTCAGAAACTCATTCACAAAAGTAGCAATATAATCTAATCAATAAAATTAAACCACCCAGAAACTACATAGATTAATTTATTTTACTT
GCAATCTCTTTAACAGGATTGGTGACTTATTTTCCTTTTACACTTGTTTGAATTAATTTTTTTTTAAGTTCTTTGAATCACATATAATCTGAATTATCTA
ACTAGATAGAGTGAGCAGTTGCACTTATAAACTATTCTAACATGAATTCAAGATAATGTGTCGGACACAGAAACGTGTCTCACGTGAATATCTTGTCTTT
TTAATAAACTTATCGTATTCATATATAAGAATATCATAGGAATACGTTAAAGTGACGCAAATTAGGAATTTAGTGTAGCATAGCTTAACTAAGCTAAGCT
AAT