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Detailed information on CNT30291318


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 1e-72

BLAST vs NONCODE:
NONBNAT007651, E-value = 3e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Triticum aestivumOryza sativa25.2314.6694.0584forward
CNT30675224Triticum aestivumSetaria viridis77.1830.9393257forward
CNT30522155Triticum aestivumSetaria italica77.4829.3587.98258forward
CNT30641079Triticum aestivumNymphaea colorata76.2834.1986.61254forward
CNT30516889Triticum aestivumJuglans regia42.0423.1487.14140forward
CNT30377262Triticum aestivumArabidopsis thaliana76.2843.4985.43254forward
CNT30617295Triticum aestivumSesamum indicum47.7538.7888.68159forward
CNT30728062Triticum aestivumCorchorus capsularis76.2829.1683.46254forward
CNT30381383Triticum aestivumManihot esculenta30.335.7585.15101forward
CNT30402401Triticum aestivumBeta vulgaris34.839.7689.66116forward
CNT30629386Triticum aestivumVigna unguiculata29.4337.9887.7698forward
CNT30196370Triticum aestivumPisum sativum53.7518.7886.03179forward
CNT30486254Triticum aestivumOlea europaea48.9542.5687.73163forward
CNT30708222Triticum aestivumGlycine max48.6540.285.8162forward
CNT3092760Triticum aestivumSolanum tuberosum68.7733.0984.72229forward
CNT30223001Triticum aestivumHordeum vulgare45.6554.6896.71152forward
CNT30390564Triticum aestivumTriticum turgidum30.9333.8897.09103forward
CNT30562825Triticum aestivumActinidia chinensis68.1741.1285.02227forward
CNT30586804Triticum aestivumMusa acuminata69.6730.0585.78232forward
CNT30542792Triticum aestivumBrassica napus34.2326.2789.47114forward
CNT30511058Triticum aestivumSolanum lycopersicum33.9347.2885.84113forward
CNT30553024Triticum aestivumOryza glaberrima76.2817.7986.22254forward
CNT30442409Triticum aestivumAegilops tauschii77.4838.5186.82258forward
CNT30253208Triticum aestivumAvena sativa77.4821.4685.27258forward
CNT30261872Triticum aestivumBrassica rapa77.1829.0482.1257forward
CNT30614070Triticum aestivumArabis alpina47.1511.3690.45157forward
CNT305432Triticum aestivumZea mays48.9544.4189.57163forward
CNT30608822Triticum aestivumGossypium raimondii76.2837.9183.46254forward
CNT30209019Triticum aestivumHelianthus annuus77.4830.984.5258forward
CNT30627268Triticum aestivumDaucus carota66.3717.8583.26221forward
CNT30681848Triticum aestivumTriticum urartu77.4829.1599.22258forward
CNT30720996Triticum aestivumTriticum spelta39.0452.8596.92130forward
CNT30341625Triticum aestivumEragrostis tef77.4826.4684.11258forward
CNT30361420Triticum aestivumSorghum bicolor59.1646.3588.83197forward
CNT30595966Triticum aestivumOryza meridionalis54.6529.6988.46182forward
CNT30369350Triticum aestivumOryza glumipatula77.1836.9891.44257forward
CNT30433323Triticum aestivumPapaver somniferum76.2823.2879.13254forward
CNT30570854Triticum aestivumVitis vinifera45.0574.6385.33150forward
CNT30706519Triticum aestivumPrunus avium77.183183.66257forward
CNT3033661Triticum aestivumTheobroma cacao57.0691.3583.16190forward
CNT3054138Triticum aestivumAmborella trichopoda59.1638.8683.25197forward
CNT3024644Triticum aestivumPopulus trichocarpa76.2812.4286.22254forward
CNT30322043Triticum aestivumAsparagus officinalis74.4729.6388.71248forward
CNT30330123Triticum aestivumDioscorea rotundata53.7517.5887.71179forward
CNT3099978Triticum aestivumOryza rufipogon76.2831.3690.16254forward
CNT30575061Triticum aestivumOryza barthii77.1828.2791.44257forward
CNT30117026Triticum aestivumOryza nivara31.8315.7794.34106forward
CNT30333708Triticum aestivumCynara cardunculus77.1831.7385.99257forward

Expression of CNT30291318

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MARIGGAHHVLGIPHLLCELWDSEGTVLLRPTGCQWSKAHHEEVEVGIQLTREP*

Sequence

>CNT30291318
TTGTTGGGGATCCACTCCACAAAGTAGGATGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCGACCTCCTTTGTGCTCATCTTTCCACGGAACATGG
CAGAGGCAGTGAGGTAACGGCCATGGCGAGGATCGGCGGCGCACATCATGTTCTTGGCATCCCACATTTGCTGTGTGAGCTCTGGGACAGTGAGGGCACG
GTACTGCTGAGACCCACGGGATGTCAATGGAGCAAAGCCCACCATGAAGAAGTGGAGGTCGGAATTCAGCTGACCAGGGAACCTTAGGCAGCATGTGACT
CCACTCATGGTAGCAGAGATTAAATGGTTCAAG