Detailed information on CNT302912


BLAST search results

BLAST vs Swiss-Prot:
sp|P00874|RBL_MAIZE, E-value = 7e-177

BLAST vs NONCODE:
NONMEST005601, E-value = 4e-159

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Zea maysSetaria viridis43.740.7998.57350forward
CNT30225281Zea maysHordeum vulgare40.3296.4294.74323forward
CNT30239038Zea maysBrassica oleracea80.451.6485.56644forward
CNT30444217Zea maysAegilops tauschii63.0589.2296.24505forward
CNT30257373Zea maysAvena sativa62.6775.695.82502forward
CNT30265852Zea maysBrassica rapa12.1122.285.5797forward
CNT30606537Zea maysGossypium raimondii47.8222.7881.98383forward
CNT30477828Zea maysArabidopsis halleri46.6973.4887.7374forward
CNT30595572Zea maysOryza meridionalis48.5645.3995.37389forward
CNT30355674Zea maysLactuca sativa74.0380.3587.69593forward
CNT3058691Zea maysAmborella trichopoda38.0868.2386.89305forward
CNT30100001Zea maysOryza rufipogon31.3497.2997.61251forward
CNT30578317Zea maysOryza barthii37.261.5792.28298forward

Expression of CNT302912

Peptides detected in this lncRNA

>peptide 1 (49 aa)
IISLPSRARSRPSLRACTQASKATRLAAAPVLSEKDTARTIFFNKIIAQ*

>peptide 2 (30 aa)
MPLDFTSFGLCFINCFGTKDKTVSPAHKWL*

Sequence

>CNT302912
GATAATTTCATTACCTTCACGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGTCCTGAGT
GAAAAAGATACCGCGAGAACGATCTTTTTCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTTATTTCGCGTTCCCCTTCTAACTTACCTACT
ACTGTACCGGAGTGGATATGATCTCCCCCCGACATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCAT
GCATTGCTCGGTGAATGTGAAGAAGTAGGCCGTTGTCGCGGCAATAATGAGACAAAGTAGTATTTGCGGTGAATCCTCCTGTTAAGTAGTCATGCATTAC
AATAGGAACCCCTAATTCCCTTGCAAATACAGCTCTCTTAATCATTTCTTCGCATGTACCTGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCAGTT
TCGGCTTGTGCTTTATAAATTGCTTCGGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAAT
CAAGTCCACCGCGTAGACACTCATAACACGCTCTACCGTAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGACCGTA
CTTGTTCAACTTATCCCTTTCAACTTGGATACCGTGAGGCGGACCTTGGAAAGTTTTTGAATAAGCAGGGGGAATTCGTAGATCCTCCAAACGTAGAGCG
C