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Detailed information on CNT30290687


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AQU5|PIP13_MAIZE, E-value = 5e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30437220Triticum aestivumAegilops tauschii35.8946.6899.63267forward
CNT30681640Triticum aestivumTriticum urartu98.2562.3294.25731forward

Expression of CNT30290687

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLSSSEQRKGGVLGFSFGFSSLTWSDQACSLL*

>peptide 2 (58 aa)
HCKRENLVDMLALITTISTAMPNNFPDNNLLNGHSSHCPTTRRQWLRATPRQVSRHFP*

>peptide 3 (63 aa)
MDTQVTVLLPEGSGCVLRRGKSLGISLEIRVDFPYLNNQQMIHYYHQLQLLNYCSYYHISSPD*

Sequence

>CNT30290687
TCCACTGCAAACGCGAAAATTTGGTGGATATGTTAGCCCTTATTACTACTATAAGCACAGCAATGCCAAACAATTTCCCAGATAATAATCTACTAAATGG
ACACTCAAGTCACTGTCCTACTACCAGAAGGCAGTGGTTGCGTGCTACGCCGAGGCAAGTCTCTCGGCATTTCCCTTGAGATCAGGGTAGACTTCCCATA
TTTGAATAACCAGCAGATGATACACTACTATCATCAGCTACAACTGCTCAATTATTGCAGCTACTATCACATCAGTTCACCAGACTGATAAACTTCCCAA
TTTACATCGGGTAATTAGGTGTGCAATAGAGAGTAGCTATGCGTCGGCATCAGCTTTAAGTTACTGAATACTACTGCCACCACATGCCTGCAGTTACTAC
TGCTGCAGAAAACAAGCAAGTGCCATGCTTTCAAGTTCAGAACAAAGGAAAGGAGGGGTGTTAGGTTTCAGTTTCGGTTTTAGTTCACTCACGTGGTCTG
ACCAGGCGTGCTCCCTGTTGTAGATGATGGCCGCGCCGAGGCCGGAGCCCTTGGTGTAGCCGGGCGCCACCACGTTGGCGCCGCCGCCGTTGCCCATGTA
CAGGCCCTGCTGGAACCCCTTCACCACGCCGGCGCCGCAGATGGCGCCCAGGCACTGCATGATGATGTAGAACACCGCCCGGGTCAGCGACAGCTTCCTC
GCCAGGAACAGCCCGAAGGTCACCGCCGGGTTGATGTGCCCGCC