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Detailed information on CNT30290560


BLAST search results

BLAST vs Swiss-Prot:
sp|P12853|PSBO_CHLRE, E-value = 4e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Triticum aestivumEucalyptus grandis43.560.3884.62442forward
CNT30525147Triticum aestivumPhaseolus vulgaris12.320.4282.4125forward
CNT30181137Triticum aestivumSecale cereale77.6678.5195.94789forward
CNT30221070Triticum aestivumHordeum vulgare20.4789.6698.08208forward
CNT30386162Triticum aestivumTriticum turgidum98.0310098.39996forward
CNT30592113Triticum aestivumMusa acuminata42.3259.0786.98430forward
CNT30436686Triticum aestivumAegilops tauschii64.5760.97100656forward
CNT30244672Triticum aestivumAvena sativa69.7895.4291.96709forward
CNT3010855Triticum aestivumZea mays37.0167.0290.69376forward
CNT30680592Triticum aestivumTriticum urartu68.777.7395.85698forward
CNT30342715Triticum aestivumEragrostis tef48.3354.6290.84491forward
CNT30368483Triticum aestivumSorghum bicolor47.4439.7792.32482forward
CNT30584070Triticum aestivumEchinochloa crusgalli47.6441.0990.08484forward
CNT30497590Triticum aestivumDigitaria exilis33.6638.8689.47342forward

Expression of CNT30290560

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPSALTVKEVGSRQNFFISYLPALKGKESTPPSMVGHWFAVPVPFTSM*

>peptide 2 (33 aa)
MPSFSSNLRVPSAPTSSGPSISPAARSSGCPRP*

>peptide 3 (32 aa)
MLPVEEDAFFTFSLANSSSSPLPPAGSATALS*

Sequence

>CNT30290560
GTTCTAAATTATTTACCTGTTAATTTATAATACATACTGTAAAATTTCCAGACAATTCAAATCAAAAGGAAGGTAAAACGAAGAAAGTGTCCACAGACAA
TTTTGTGAACATTCATGGGGGATCAATATCATGAGTAGGCGAGGAAGAAACAATAACAGAAGCTAAAATATAAACCGACACCCTGGGTTTAGATTACTAG
ATACACACACAAACACACATTGTTGCCTCGATTGTTTCCTCTCCACCGATCAACCCACGTACGCATGCACACAAGATGAGTATCTTCACTTCTGCTCTGC
TCTAGTTAGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCGAGGTCGGTGTCTGACGGCTGCACGCTCTCGAA
GACGCCGATCACCTCGCCGGTCTCCGGCTTGCTCTTGGTGACGCTGAGCGTGATGTTGCCCGTGGAGGAGGACGCGTTCTTCACGTTCTCCTTGGCCAAC
TCCTCCTCGTCTCCTCTGCCTCCGGCGGGTAGCGCCACGGCGTTGTCGTAGCCAGTAGAGCCACCACGGCCCTTTGGGTCGAGGAAAGACGAACCCCTGT
AGCTGGGCACGAGGAAGGGCCCGCTGAAGCTCTCGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAAGGGCACGCGCTCGCCTCCGGGGAG
CTGCACGGTGACGGCCGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCGACCTCGAGCGGGCCTTCCATCTCGCCGGCGGCT
CGTTCTTCTGGATGCCCTCGGCCTTGACGGTGAAGGAGGTGGGCTCCAGGCAGAACTTCTTCATCTCGTACTTGCCGGCCTTGAAGGGGAAGGAGTCGAC
GCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTACCCTTCACCTCCATGTAGGTCTTGCTCTGGATCTCGTCGAAGGTCAGCCTCTTGGGCGCC
CCCTCCGCGCTCGCGC