Detailed information on CNT30290333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631225Triticum aestivumVigna unguiculata27.974.8383.02106reverse complement
CNT30511593Triticum aestivumSolanum lycopersicum24.814.4491.4994forward
CNT30363261Triticum aestivumSorghum bicolor82.0624.4395.82311forward
CNT30596724Triticum aestivumOryza meridionalis82.0612.8698.07311reverse complement
CNT3037013Triticum aestivumCucumis melo36.9417.8196.43140reverse complement
CNT30497700Triticum aestivumDigitaria exilis53.0336.7597.51201reverse complement

Expression of CNT30290333

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRQNSSMP*

>peptide 2 (36 aa)
MQRSSYSKPQSSHPLSPTSHLGTHCTYREKGAFPSS*

Sequence

>CNT30290333
TTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAA
AATAGCTCGATGCCATAATGATAAAAAGCTTAACACCTCTTATTTGACTTTTTCACTATTTTGAAATAAGAAAAAGATCCAAATCTAAAATGCAAAGGTC
GTCTTATTCAAAACCTCAATCATCACATCCCCTCTCTCCCACTTCACACCTCGGAACGCACTGTACTTATAGAGAGAAAGGCGCTTTCCCATCTTCTTAA
CCTGAAATGAAGGGGTACCCCCGGGAAGAGATCCAGTGGAGACAGCTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGG