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Detailed information on CNT30290212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676593Triticum aestivumSetaria viridis44.9318.4493.14102forward
CNT30244584Triticum aestivumAvena sativa71.3744.6394.44162forward
CNT30151725Triticum aestivumBrachypodium distachyon71.8157.1993.87163forward
CNT30101296Triticum aestivumOryza rufipogon69.627.4896.84158forward

Expression of CNT30290212

Peptides detected in this lncRNA

>peptide 1 (70 aa)
TVPADLPSPSTVSMLLYCSGKILGNSSVDSRIAVHSFSAGDFTSTTSSTLDAIDRPGCKVATRSKLLPAT*

>peptide 2 (74 aa)
GAGGLAVALHGLDALVLLGEDLGEQLRRLAHRRPQLLRRRLHLHHQLDLGRHRSTGMQSCNALKALASYLISEVT

>peptide 3 (72 aa)
RCRRTCRRPPRSRCSCTARGRSWGTAPSTRASPSTASPPATSPPPPARPWTPSIDRDAKLQRAQSSCQLLDQ*

Sequence

>CNT30290212
ACGGTGCCGGCGGACTTGCCGTCGCCCTCCACGGTCTCGATGCTCTTGTACTGCTCGGGGAAGATCTTGGGGAACAGCTCCGTCGACTCGCGCATCGCCG
TCCACAGCTTCTCCGCCGGCGACTTCACCTCCACCACCAGCTCGACCTTGGACGCCATCGATCGACCGGGATGCAAAGTTGCAACGCGCTCAAAGCTCTT
GCCAGCTACTTGATCAGTGAAGTGACT