Detailed information on CNT30289860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221016Triticum aestivumHordeum vulgare67.5331.9492.35183forward
CNT30436341Triticum aestivumAegilops tauschii10089.14100271forward

Expression of CNT30289860

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MHDACTARAGWLSSTAGASSVGCRPRTTSRARPRCRRARRRGTCRR*

>peptide 2 (88 aa)
HIVSSVDTYARMGRYGYVYVDLHAYVHEPCMMHARRALAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEVEVDVVHHAD

Sequence

>CNT30289860
TCCACATCGTTTCTTCAGTAGATACGTACGCACGCATGGGTAGGTATGGGTATGTGTATGTCGATCTGCACGCGTACGTGCACGAGCCATGCATGATGCA
TGCACGGCGCGCGCTGGCTGGCTCAGTAGTACGGCTGGAGCTTCCAGCGTTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCG
CACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGACGC