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Detailed information on CNT30289517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 4e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Triticum aestivumOryza sativa49.3742.8689.38273forward
CNT30531266Triticum aestivumEucalyptus grandis28.2136.8882.69156forward
CNT30548370Triticum aestivumIpomoea triloba9.5822.7588.6853forward
CNT30159576Triticum aestivumPistacia vera31.2821.8483.24173forward
CNT30387764Triticum aestivumTriticum turgidum10062.34100553forward
CNT30569510Triticum aestivumActinidia chinensis14.8339.4295.1282forward
CNT3085023Triticum aestivumVigna radiata3438.8481.91188forward
CNT30553402Triticum aestivumOryza glaberrima49.3752.289.38273forward
CNT30436608Triticum aestivumAegilops tauschii51.1839.3698.94283forward
CNT30659451Triticum aestivumTriticum dicoccoides54.6184.12100302forward
CNT3079298Triticum aestivumBrassica juncea15.7320.4787.3687forward
CNT30228928Triticum aestivumAnanas comosus27.8539.4986.36154forward
CNT30218729Triticum aestivumKalanchoe fedtschenkoi26.7651.0381.76148forward
CNT30653715Triticum aestivumRosa chinensis26.5825.2187.07147forward
CNT30214941Triticum aestivumHelianthus annuus14.8332.1690.2482forward
CNT30680357Triticum aestivumTriticum urartu32.5563.3897.78180forward
CNT30596194Triticum aestivumOryza meridionalis49.3762.7688.28273forward
CNT30370054Triticum aestivumOryza glumipatula49.3752.289.38273forward
CNT30109688Triticum aestivumOryza longistaminata49.3751.5189.38273forward
CNT30331328Triticum aestivumDioscorea rotundata44.8548.3486.29248forward
CNT30148068Triticum aestivumBrachypodium distachyon21.1620.2191.45117forward
CNT30101372Triticum aestivumOryza rufipogon49.3736.2189.38273forward
CNT30576241Triticum aestivumOryza barthii49.3741.1889.38273forward
CNT30116534Triticum aestivumOryza nivara49.3763.1989.38273forward
CNT30113851Triticum aestivumFicus carica14.4728.889580forward

Expression of CNT30289517

Peptides detected in this lncRNA

>peptide 1 (66 aa)
GLMPVPVMGMVARCTMKTANPMGSGASTGTWESRALRLGSVAEKTVYTSTKVTAGLMWPPEMPAVQ*

>peptide 2 (42 aa)
GVDAGAGDGDGGEVHHEDGEPDGERGQHGDVGVAGAALGVGG*

Sequence

>CNT30289517
GGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCGAGGTGCACCATGAAGACGGCGAACCCGATGGGGAGCGGGGCCAGCACGGGGACGTGGGAGTCG
CGGGCGCTGCGCTTGGGGTCGGTGGCTGAGAAGACGGTGTACACCAGCACGAAGGTGACGGCAGGGTTGATGTGGCCCCCCGAGATGCCGGCGGTGCAGT
AGACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCGAGCACGCCGACGCCGCCGCACGGGTCGGCCGCCGACTGCACCTTGTAGCCGATGAC
GGTGGCGACGGTGATGTAGAGGAAGAGCAGCGTGGCGACGAACTCGGCGATGAGGGCCCGGTAGAAGGACCACATCCGGAGCTCCCCCATGTCGAACAGC
GGCGCCGGCGGCGGGTCGGAGTAGTCCTTGTGCGCCGGCGCGGCGTGCTCCGGCTCCTCGCTCACCTCCTTGGCCATGGCTGCTGCAGCGTGCGGACGTT
CTCCTCTCTCTCTCTTCTGTGATGGATGGATGGGTGGGGGTGGTGGAGTGTGA