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Detailed information on CNT30289293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Triticum aestivumSetaria italica38.8215.7389.83118forward
CNT30530404Triticum aestivumEucalyptus grandis74.0163.3886.67225forward
CNT30316147Triticum aestivumCorylus avellana59.5424.386.19181forward
CNT30703138Triticum aestivumQuercus lobata38.8222.5285.59118forward
CNT30375121Triticum aestivumArabidopsis thaliana23.369.7185.9271forward
CNT30500451Triticum aestivumCoffea canephora23.036.5685.7170forward
CNT30729539Triticum aestivumCorchorus capsularis33.2215.0382.18101forward
CNT3068683Triticum aestivumQuercus suber38.8223.9885.59118forward
CNT30524728Triticum aestivumPhaseolus vulgaris45.0725.3783.21137forward
CNT30177095Triticum aestivumSecale cereale46.3810.1785.11141forward
CNT30223417Triticum aestivumHordeum vulgare65.7988.1183.5200forward
CNT30590847Triticum aestivumMusa acuminata41.1227.3584.8125forward
CNT3084565Triticum aestivumVigna radiata46.058.2882.86140forward
CNT30539234Triticum aestivumBrassica napus43.0914.3284.73131forward
CNT30244810Triticum aestivumAvena sativa42.4315.9785.27129forward
CNT30261302Triticum aestivumBrassica rapa43.0925.3484.73131forward
CNT30457070Triticum aestivumSaccharum spontaneum42.1118.887.5128forward
CNT30131528Triticum aestivumLolium perenne70.7246.6484.19215forward
CNT30231964Triticum aestivumAnanas comosus24.015.9889.0473forward
CNT3066796Triticum aestivumLeersia perrieri42.4333.1683.72129forward
CNT30653881Triticum aestivumRosa chinensis66.7819.0182.27203forward
CNT30718631Triticum aestivumMalus domestica golden41.4521.9587.3126forward
CNT30339698Triticum aestivumEragrostis tef70.7217.4186.05215forward
CNT30477892Triticum aestivumArabidopsis halleri41.7811.8782.68127forward
CNT30363710Triticum aestivumSorghum bicolor42.1121.8187.5128forward
CNT30595456Triticum aestivumOryza meridionalis42.4322.6386.05129forward
CNT30570592Triticum aestivumVitis vinifera40.1337.7783.61122forward
CNT3055709Triticum aestivumAmborella trichopoda63.4929.5179.27193forward
CNT30105598Triticum aestivumOryza longistaminata39.1417.2789.92119forward
CNT30319856Triticum aestivumAsparagus officinalis38.8242.1488.98118forward
CNT30102778Triticum aestivumOryza rufipogon40.1348.2295.08122forward
CNT30574680Triticum aestivumOryza barthii49.0116.2786.58149forward
CNT30580197Triticum aestivumEchinochloa crusgalli42.1115.5388.28128forward
CNT30499107Triticum aestivumDigitaria exilis37.529.1687.72114forward
CNT30115589Triticum aestivumOryza nivara49.0110.4486.58149forward
CNT30594668Triticum aestivumEragrostis curvula42.4338.2882.95129forward
CNT30604168Triticum aestivumOryza punctata70.7277.984.65215forward
CNT30174824Triticum aestivumVigna angularis25885.5376forward
CNT30550386Triticum aestivumOryza brachyantha39.1443.2790.76119forward
CNT30337932Triticum aestivumCynara cardunculus43.4216.180.3132forward
CNT3064271Triticum aestivumSelaginella moellendorffii65.7936.3683200forward

Expression of CNT30289293

Peptides detected in this lncRNA

>peptide 1 (99 aa)
AVDLAGAGEEEAGADALGEAEHVERAHHVGLDGLDGVELVVHGGGRAGEVVDLVHLQQDRLHHVVPDHLEVGVPGVVVVVEGERRRKTRVARAMPTKEKT

Sequence

>CNT30289293
TCGCCGTAGACCTCGCTGGTGCTGGTGAGGAGGAAGCGGGCGCCGACGCGCTTGGCGAGGCCGAGCATGTTGAGCGTGCCCACCACGTTGGTCTTGATGG
TCTTGACGGGGTTGAACTTGTAGTGCACGGGGGAGGCCGGGCAGGCGAGGTGGTAGATCTGGTCCACCTCCAGCAGGATCGGCTCCACCACGTCGTGCCG
GATCATCTCGAAGTTGGGGTTCCCGGCGTGGTGGTGGTGGTGGAGGGGGAGAGGAGGAGGAAGACGAGGGTGGCGAGGGCCATGCCGACCAAGGAGAAGA
CGAG