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Detailed information on CNT30289113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30252596Triticum aestivumAvena sativa48.8721.6296.3216forward
CNT30596537Triticum aestivumOryza meridionalis45.9336.5894.09203forward

Expression of CNT30289113

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSISTRACTVHEPRTHAWHALAGSLSSTAGASSAGCRPRTTSRARPRCRRGRRRGTCRR*

>peptide 2 (76 aa)
FHMNGACVFHCLYVFYLFNQLIKVLYCYVTCHYTYKHNTAGSVILRRRFGHVDLHACVHRARATHACMARAGWLAQ*

>peptide 3 (80 aa)
MHGTRWLARSVVRLELPALVVALAPLPEHDLGAVADAAVVLVAVEGVEVEVDVVHHAHAPEPVAHVPALRPQHRLVQVVWV

>peptide 4 (46 aa)
SHERCMRISLFIRILLVQSAHKGPLLLRNLSLHIQAQHSWLRYSAA*

Sequence

>CNT30289113
TTTCACATGAACGGTGCATGCGTATTTCACTGTTTATACGTATTTTACTTGTTCAATCAGCTCATAAAGGTCCTTTATTGTTACGTAACTTGTCATTACA
CATACAAGCACAACACAGCTGGCTCCGTTATTCTGCGGCGTAGGTTTGGGCATGTCGATCTCCACGCGTGCGTGCACCGTGCACGAGCCACGCACGCATG
CATGGCACGCGCTGGCTGGCTCGCTCAGTAGTACGGCTGGAGCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCG
CGGACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCACCTGAACCCGTTGCCCACGTCCCTGC
TCTCCGTCCACAGCACCGACTCGTCCAGGTAGTCTGGGTTGT