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Detailed information on CNT30288901


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 9e-37

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670612Triticum aestivumSetaria viridis42.985096.53202forward
CNT30522472Triticum aestivumSetaria italica47.6640.895.98224forward
CNT30387206Triticum aestivumTriticum turgidum76.664.52100360forward
CNT30565712Triticum aestivumActinidia chinensis43.8368.987.38206forward
CNT30436660Triticum aestivumAegilops tauschii77.2376.7490.91363forward
CNT30252948Triticum aestivumAvena sativa47.6643.2496.43224forward
CNT30101875Triticum aestivumOryza rufipogon47.4530.9397.31223forward
CNT30581397Triticum aestivumEchinochloa crusgalli47.8738.3396.89225forward

Expression of CNT30288901

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MRPEMRFTPPLLASLRIAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDIAAPPSSERCARLGRRGSA

>peptide 2 (57 aa)
EHKTRNTTTHAKAVANPISHSTHHRGHTTDTVPTTATATRGTHGSSLRSRRGCGPGA*

Sequence

>CNT30288901
TGAACACAAGACACGGAACACAACGACGCACGCCAAAGCGGTAGCAAATCCCATCTCCCACAGCACACATCACAGAGGACACACGACAGACACAGTCCCA
ACTACCGCTACCGCCACCCGCGGAACCCACGGATCTAGCCTCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGT
GACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGTGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTGGCC
AGCCTCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCCAGCCCCTTGCCGCCCTTGC
CGCGCCCCGACATCGCCGCTCCGCCTAGCTCCGAGAGGTGTGCGAGATTGGGAAGAAGAGGAAGTGCTGC