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Detailed information on CNT30288857


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 1e-90

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221752Triticum aestivumHordeum vulgare46.6788.9492.77595forward
CNT30387693Triticum aestivumTriticum turgidum77.893.5100992forward
CNT30659819Triticum aestivumTriticum dicoccoides37.160.0399.58473forward
CNT30720492Triticum aestivumTriticum spelta24.4762.0398.08312forward
CNT30371468Triticum aestivumOryza glumipatula2022.1585.88255forward
CNT30104669Triticum aestivumOryza rufipogon29.6545.686.51378forward

Expression of CNT30288857

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKNMLWSSSRVVDKSEVHKRPSYIGHCFNS*

>peptide 2 (56 aa)
MHLILPPLLTLLRPALPERRLTGRPAVDLSPWKGATVVADDAITAGAMARELLGGEA

>peptide 3 (53 aa)
MNTIDQHLVLKERPGHKSKITPYGLPIHCGGSPQARRLKGSSSCFRFRVVYGH*

Sequence

>CNT30288857
GTTTTATATAATAAATATCACACAGGTTTTGTATATGTGTAGCCGGCTCTAGAATTTACATATGCATGCTCGAGAATCTATGTTCGTACATACATACACA
GACCATATAGAATGAAAAATATGCTCTGGTCGTCCAGCAGAGTCGTGGACAAAAGTGAAGTTCACAAAAGACCTTCATACATAGGCCATTGTTTCAACTC
GTAGTTTAGGCCTTGCCAGACTCCTCGCAACCCGGTGGCCTGAAGGCAATGAAGCTGACGCACTGCACCTGGCGTAGGTTGTCGAAGCCGATGACACGGA
CATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTCAGCACCTGTGTGGCGTCAGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTA
TCGGCCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTTGAGCGGATCAGGTAG
TCGACCTGCTTTAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAGATGGAA
TGAACACAATTGATCAACACTTGGTGCTTAAAGAAAGACCTGGCCATAAGTCAAAAATTACTCCTTATGGTCTGCCCATACATTGTGGGGGGTCTCCACA
AGCAAGAAGGCTCAAGGGCAGCAGCTCTTGCTTCAGGTTCAGGGTAGTGTACGGGCATTAAAAATGATATTATCTAGTACACATTGCGATAAAATCAATT
TCCGTTCACAAAGTTTATGAGTTAAATATTCCTACACATGTGAACCTGCTTACGGACTACATACATTGTGATGCACCATCTTAGTTTACTTTGGCCTGGT
GTGTGGGTTACACATCCTAATTAAGGATAGCTTTGGCTATGTACAGTGGAAATATCCGATAAATTAATCAACTGTGCCGACAAGAATATTCGTGTGAGCT
TAGTGTTCGTCCTACCTCGCAAAAATAATACTCTGTCCGATACAAAATAAGTGTTGCTGTTTTGTATTAAGATTACCGAGGAAGTAATTAGTGTTCATAC
CTGCATGCATCTGATCCTTCCGCCATTGCTGACGCTGCTGAGACCGGCGCTGCCGGAGCGGCGGCTGACGGGGAGGCCGGCGGTCGACTTGAGCCCCTGG
AAGGGCGCGACGGTGGTGGCGGACGATGCCATCACGGCTGGGGCCATGGCACGTGAATTGCTAGGTGGGGAGGCG