Detailed information on CNT30288744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 8e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680542Triticum aestivumTriticum urartu32.4150.8198.4188forward
CNT30117229Triticum aestivumOryza nivara27.9327.6595.06162forward

Expression of CNT30288744

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGRFGHVDLHACVHRARATHACMARAGWLAQ*

>peptide 2 (72 aa)
MHGTRWLARSVVRLELPALVVALAPLPEHDLGAVADAAVVLVAVEGVEVEVDVVHHAHAPEPVAHVPASKLR*

>peptide 3 (86 aa)
MLFIRDSPHRFFSSTSRYVRTAWVGLGMSISTRACTVHEPRTHAWHALAGSLSSTAGASSAGCRPRTTSRARPRCRRGRRRGTCRR*

>peptide 4 (46 aa)
MNGACVFHCLYVFYLFNQLIKVLYCYVTCHYTYKHNTAGSVILRRR*

>peptide 5 (58 aa)
YRVRWKRGCVSISHERCMRISLFIRILLVQSAHKGPLLLRNLSLHIQAQHSWLRYSAA*

Sequence

>CNT30288744
CTACCGAGTCCGTTGGAAACGTGGGTGTGTGAGTATTTCACATGAACGGTGCATGCGTATTTCACTGTTTATACGTATTTTACTTGTTCAATCAGCTCAT
AAAGGTCCTTTATTGTTACGTAACTTGTCATTACACATACAAGCACAACACAGCTGGCTCCGTTATTCTGCGGCGTAGGTAGCGAGAGACGCATGCATGT
TGTTTATCCGGGACAGTCCACATCGTTTCTTCAGTAGTACTAGTAGATACGTACGTACGGCATGGGTAGGTTTGGGCATGTCGATCTCCACGCGTGCGTG
CACCGTGCACGAGCCACGCACGCATGCATGGCACGCGCTGGCTGGCTCGCTCAGTAGTACGGCTGGAGCTTCCAGCGCTGGTTGTCGCCCTCGCACCACT
TCCAGAGCACGACCTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCA
CCTGAACCCGTTGCCCACGTCCCTGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCAGCGGAAGCCCTTGCC