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Detailed information on CNT30288709


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 8e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30252135Triticum aestivumAvena sativa43.3643.5692.08379forward

Expression of CNT30288709

Peptides detected in this lncRNA

>peptide 1 (64 aa)
PRINSRTMVRLLYIINITLVLYMCSRACSTTYVRTNTDHMEREICSGRKAESWTKVKFTNDHHT*

>peptide 2 (48 aa)
MNRMRTDAQYLVISQLIVLNYARKNQSTSQKLLLMGSSHMHCWVVHNQ*

>peptide 3 (33 aa)
MLHNLCSYKHRSYGTRNMLWSESRVVDKSEVHK*

Sequence

>CNT30288709
TTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGTATATGTGTAGCCGTGCATGCTCCACAACCTATGT
TCGTACAAACACAGATCATATGGAACGAGAAATATGCTCTGGTCGGAAAGCAGAGTCGTGGACAAAAGTGAAGTTCACAAATGACCATCATACATAGGCC
ATTGTTTCAACTTGTAGTTTAGGCCTTGCCGGACTCCTCGCAACCTGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAG
CCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTAGCGTCGGTGCACCCGAACATAGGCAGCTTCC
ACATTGTCCAGTATCGACCATCGTAGTACCCGGGGGAGCTGTTGTGCTCACGGAAAACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGA
GCGGATCAAGTAGTCGACCTGCTTCAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCACACC
TAAATGAATAGAATGCGCACAGATGCTCAATACTTGGTGATAAGTCAATTAATTGTACTAAACTACGCTAGAAAAAATCAGTCGACAAGCCAAAAATTGC
TCCTTATGGGCAGCTCTCATATGCATTGCTGGGTTGTTCACAATCAATAAAGCTTTGGTTGTACTTAGTGCTAGTATATGGGTCCTATTTCGAGGATGGG
TTTGGTTATATACATTGGGGATGTTCTGCAAGTGAATTACTTGCACTGACAAAGAAACTCATATCTGTTTAATT