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Detailed information on CNT30288480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521203Triticum aestivumSetaria italica23.3814.8685.4137forward
CNT30436541Triticum aestivumAegilops tauschii64.1668.6197.07376forward

Expression of CNT30288480

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLHNLCSYKHRSYGTRNMLWSESRVVDKSEVHK*

>peptide 2 (64 aa)
PRINSRTMVRLLYIINITLVLYMCSRACSTTYVRTNTDHMEREICSGRKAESWTKVKFTNDHHT*

>peptide 3 (56 aa)
MHLILPPLLTRPRLPLERRLTGRPAVDLSPWKGATVVADEAITAGAMVLYYRRRGGC

Sequence

>CNT30288480
TTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGTATATGTGTAGCCGTGCATGCTCCACAACCTATGT
TCGTACAAACACAGATCATATGGAACGAGAAATATGCTCTGGTCGGAAAGCAGAGTCGTGGACAAAAGTGAAGTTCACAAATGACCATCATACATAGGCC
ATTGTTTCAACTTGTAGTCTACCTGCTTTAGGAGGGCCTCTGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATACCCTCAATCGGCCA
CACCTGAATGGATGGAAATTATGGAATGCACACAACTGCTTAACACTTGGTGCTAGTAAATTGTACGTACTGAGGAAGAAACTCATATCAGTTTTGTGCC
TCTGACATACCTGCATGCACCTGATCCTTCCGCCATTGCTGACGCGGCCGAGGCTGCCGCTGGAGCGGCGGCTGACGGGCAGACCGGCTGTGGACTTGAG
CCCCTGGAAGGGTGCGACGGTGGTAGCCGACGAAGCCATCACGGCGGGGGCCATGGTATTGTATTATCGGAGGAGAGGAGGATGCC