« Back to Triticum aestivum search


Detailed information on CNT30288382


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387937Triticum aestivumTriticum turgidum90.5686.0299.9978forward
CNT30436767Triticum aestivumAegilops tauschii61.8589.5495.66668forward
CNT30659556Triticum aestivumTriticum dicoccoides47.7892.8199.81516forward
CNT30136970Triticum aestivumLolium perenne35.7460.4187.56386forward

Expression of CNT30288382

Peptides detected in this lncRNA

>peptide 1 (56 aa)
VRLLYIINITLVLYMCSRACSTTYVRTNTDHMEREICSGRKAESWTKVKFTNDHHT*

>peptide 2 (53 aa)
MNTIDQHLVLKERPGHKSKITPYGLPIHCGGSPQARRLKGSSSCFRFRVVYGH*

>peptide 3 (33 aa)
MLHNLCSYKHRSYGTRNMLWSESRVVDKSEVHK*

Sequence

>CNT30288382
GTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGTATATGTGTAGCCGTGCATGCTCCACAACCTATGTTCGTACAAACACAGATCATATGGAAC
GAGAAATATGCTCTGGTCGGAAAGCAGAGTCGTGGACAAAAGTGAAGTTCACAAATGACCATCATACATAGGCCATTGTTTCAACTTGTAGTTTAGGCCT
TGCCGGACTCCTCGCAACCTGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGG
GTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTAGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCATCGTAG
TACCCGGGGGAGCTGTTGTGCTCACGGAAAACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAAGTAGTCGACCTGCTTTA
GGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAGATGGAATGAACACAATTGA
TCAACACTTGGTGCTTAAAGAAAGACCTGGCCATAAGTCAAAAATTACTCCTTATGGTCTGCCCATACATTGTGGGGGGTCTCCACAAGCAAGAAGGCTC
AAGGGCAGCAGCTCTTGCTTCAGGTTCAGGGTAGTGTACGGGCATTAAAAATGATATTATCTAGTACACATTGCGATAAAATCAATTTCCGTTCACAAAG
TTTATGAGTTAAATATTCCTACACATGTGAACCTGCTTACGGACTACATACATTGTGATGCACCATCTTAGTTTACTTTGGCCTGGTGTGTGGGTTACAC
ATCCTAATTAAGGATAGCTTTGGCTATGTACAGTGGAAATATCCGATAAATTAATCAACTGTGCCGACAAGAATATTCGTGTGAGCTTAGTGTTCGTCCT
ACCTCGCAAAAATAATACTCTGTCCGATACAAAATAAGTGTTGCTGTTTTGTATTAAGATTACCGAGGAAGTAATTAGTG