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Detailed information on CNT30287807


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180826Triticum aestivumSecale cereale41.6441.6892.86476forward
CNT30221104Triticum aestivumHordeum vulgare67.1962.9591.54768forward
CNT30386026Triticum aestivumTriticum turgidum10089.9397.381143forward
CNT30251828Triticum aestivumAvena sativa41.9957.0187.71480forward
CNT30657592Triticum aestivumTriticum dicoccoides56.7874.8699.85649forward
CNT30681645Triticum aestivumTriticum urartu68.0753.1899.74778forward

Expression of CNT30287807

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKNMLWSSSRVVDKSDVHKRPSYIGHCFNS*

Sequence

>CNT30287807
GCTTGTTGTATATAATAAATATCACACATGTTTTGTATATGTGTAGCCGGTTCTAGAATTTACATATGCATGCTCGAGAACCTATGTTCGTACATACATA
CACAGACCATATAGAATGAAAAATATGCTCTGGTCGTCCAGCAGAGTCGTGGACAAAAGTGACGTTCACAAAAGACCTTCATACATAGGCCATTGTTTCA
ACTCGTAGTTTAGGCCTTGCCAGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACG
CGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCA
GGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCGTCGT
AGTACCCGGGGGAGCTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTT
AAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAGATGGAATTAACACAATT
GATCAACACTTAGTGCTTGAAGAAAGACCTAGCCATAATAAGGCAAAAATTACTCCTTATGTCCATACATTTGTGGGGGGGTCTCCACAAGCAAGAAAGC
ACAAGGGCACCTCTTTCTTATCGGTAGTGTATGGGCATTAAAATTAATATTATCTAGTACACATTGGAATAAAATCGATTTCAATTCACAAAGTTTATGA
GTTAAATATTCCTACACATGTGAACCTGCTTACGGACTACATTGTGATGCACAGTTTGGCCGGGCATGTGGGCGTCCTACGGATAGCTTTGCCTATGTGC
AGTGGAAATACCCGATAAATTAATCAATTGTGGCAACAAAAACATTCATGCCAGCTTAGTGTCCGTCATCCTTCGCTAAAAAAAATCGAAAAGGAGGATA
ACTCCAGCCTCTGCATCAAGTGATATGCACACTGTCATTTTTA