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Detailed information on CNT30287617


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 5e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Triticum aestivumOryza sativa58.8837.2289.25335forward
CNT30676635Triticum aestivumSetaria viridis50.6282.7688.89288forward
CNT30561426Triticum aestivumActinidia chinensis20.3915.7285.34116forward
CNT30254596Triticum aestivumAvena sativa51.4922.184.3293forward
CNT30658759Triticum aestivumTriticum dicoccoides58.8856.5997.91335forward
CNT30625756Triticum aestivumDaucus carota26.1930.7280.54149forward
CNT30150411Triticum aestivumBrachypodium distachyon55.1862.1885.67314forward
CNT30101573Triticum aestivumOryza rufipogon52.235.0689.23297forward
CNT30498115Triticum aestivumDigitaria exilis55.1839.685.67314forward
CNT30558331Triticum aestivumPanicum hallii58.3540.188.86332forward

Expression of CNT30287617

Peptides detected in this lncRNA

>peptide 1 (70 aa)
NEAFNCSSETEQLPSKRKKKTELKRYTGIQLARTCIYVCFVYITISSASLQTSNFKRVKEERQKRKRTHN*

>peptide 2 (42 aa)
MKPSTVLQKQSNYPQKEKRKQNSKDILAYSLLVHASMFVSFT*

Sequence

>CNT30287617
AAATGAAGCCTTCAACTGTTCTTCAGAAACAGAGCAACTACCCTCAAAAAGAAAAAAGAAAACAGAACTCAAAAGATATACTGGCATACAGCTTGCTCGT
ACATGCATCTATGTTTGTTTCGTTTACATAACAATTTCTAGTGCCTCGCTTCAAACTTCGAACTTCAAGAGAGTGAAAGAGGAGAGACAAAAAAGGAAGA
GAACACATAACTGAAAGGGCAGTGATATTAATCTAGAACTACCACCTTACCATCCGAATCCACATCAACAATAGCAGAATCACCTTCCTTGACCTCGCCA
GCCAGCATCTTTTCAGCCAGACTGTCTTCCAAAAGCCTCATAATGGCGCGTCGCAGAGGCCTGGCACCGTAGCTCGGGTTGTAACCTTCATCAACAACCC
TATCCCGGAACTTCTCTGTTACCTGGAGGTCGATTTCCTTTGCCTTGAGCCTATCAAACACCTCCTTGAGCATAATATCAGCGATCTCTTTCACCTCCAA
CTTTGTCAACTGCCGGAACACAATCATCTCATCCAATCTGTTCAAGAACTCAGGCCGGAAATACTGCTT