« Back to Triticum aestivum search


Detailed information on CNT30286499


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L383|PSBE_SACHY, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020910Triticum aestivumCitrullus lanatus17.26100.985.71224forward
CNT30234601Triticum aestivumBrassica oleracea14.4839.9289.89188forward
CNT30555951Triticum aestivumOryza glaberrima12.9420.4699.4168forward
CNT30666971Triticum aestivumTriticum dicoccoides12.7164.71100165forward
CNT30355329Triticum aestivumLactuca sativa32.1358.7391.37417forward
CNT3025537Triticum aestivumPopulus trichocarpa9.0929.5794.92118forward
CNT30149874Triticum aestivumBrachypodium distachyon22.2722.4298.27289forward
CNT30574605Triticum aestivumOryza barthii23.8118.1797.73309forward
CNT30117202Triticum aestivumOryza nivara45.7631.8898.48594forward

Expression of CNT30286499

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MAQQSGFAWFRNIITFLFFLSIGKLYVIQGINRKPHFCRFYLLFIGFGIYRVIRNSSQNLGKI*

>peptide 2 (36 aa)
MNNPVSNTGNNISKRTFSRASRHAELPKFLYIQKRN*

Sequence

>CNT30286499
GTGTGATTGTGTCATAGTTCTATAGTTGGAATTTGGTTTATCGTTGGATGAACTGCATTGCTGATATTGATCCCAAGAAAAAAACAGTAGGTACAGCTAG
TCCGTGAATAGCCAGCCATCGCACTGTAAAAATAGGATAGGTTCGATCTATGGTCATTGAGGGCCTCCTAAAAGGATCTACTAAATTCATCGAGTTGTTC
TAAAGAATCAAAACGGTCGGTTATTAACGGAATTCCTTGTCGGCTTTCCGTGAAATACTCGTTTGGCCTAGGACTTCCAAACACGTCATAAGCTAAACCC
GTACTGACAAATAACCAACCCGCAATGAATAGGGAAGGTATAGTAATGCTATGAATAACCCAGTATCGAATACTGGTAATAATATCAGCAAAAGAACGTT
CTCCCGTGCTTCCAGACATGCTGAACTCCCAAAATTTTTGTACATTCAAAAAAGGAATTGATTCCGTAAAAGATGGGATCGACCAGTAAATAGAAAATTA
CTGATATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGAGTATACCGAATTAGTATAGCTATCCTTCCTATGGCACAGCAATCTGG
TTTTGCCTGGTTCCGAAACATAATTACTTTTTTATTTTTTTTGTCTATAGGTAAGCTATATGTTATTCAAGGCATCAATAGAAAACCCCATTTTTGTAGG
TTCTACTTACTTTTCATTGGCTTCGGAATATATAGAGTAATTCGGAATAGCAGCCAAAATCTTGGGAAAATCTAAGTTAATGATCAATAGGTTTGGATAA
ATAATTTAGGAAGGATATTCTCATACTGACACAATACAAGGACAAGTATATGTGAAATCTATCCTTTCATAATTCGTAATTCATCCTTGTATTGTTTGTT
GGATTAGGTCTAACTTTCTTGACCAAACTGCGAGCGCGGAACTTTACGAGATGAAATAGGGAAAGACAGAAGATAGAATAGAACTTAAAAGGATAATTGA
AGTGACTCGTCTTCGAATCTACTTTGGTTGGAGTTCGAAAAAGGAATAAAAATAAAGTAAATTCAAGGAAGAGCTTTCTTTTTTTTTTAACAGCCCCTTG
GCAGGTCGTGGAATGCTTTTGTTCTCCTCTTATTCCATATGGAATACAATCAGTTAAAATAAGAAGGAATAGGGGAATATTCGATCGTTCACTCCAAAAC
GAGGGTCCTATTGAAAAAGAAATTATCCAAAATAGAAAGAAGTTTTTTTTTCAAATTCAATTGTTTATTTATCTCTTATTCAAAAATTTCCCTGAAAA