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Detailed information on CNT30286397


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-51

BLAST vs NONCODE:
NONGMAT000508, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Triticum aestivumArabidopsis thaliana13.6936.4487.2186forward
CNT30178595Triticum aestivumSecale cereale91.2496.1491.97573forward
CNT30382783Triticum aestivumTriticum turgidum87.4298.2194.35549forward
CNT30435210Triticum aestivumAegilops tauschii10098.999.36628forward
CNT30655816Triticum aestivumTriticum dicoccoides10098.7492.68628forward
CNT30679687Triticum aestivumTriticum urartu72.6175.3792.98456forward
CNT30147953Triticum aestivumBrachypodium distachyon50.3236.3694.94316forward

Expression of CNT30286397

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSPEMRLTPPLRARRRIAGLVMPWMLSRSTFLWRLAPPLPSPLPPLPRPDMADGLSFVRAWSECGIGGAV

>peptide 2 (62 aa)
PNRTKFNITAETTVVHDRDAADQPARQNHKHCICTKTSSMSKLQMRIALFHDSLGTTGEIAN*

>peptide 3 (46 aa)
PIAQNLTSQQKQQSYMTEMQQTNQRDKITNTVFAQRQARCPNSRCE*

Sequence

>CNT30286397
CCCAATCGCACAAAATTTAACATCACAGCAGAAACAACAGTCGTACATGACAGAGATGCAGCAGACCAACCAGCGAGACAAAATCACAAACACTGTATTT
GCACAAAGACAAGCTCGATGTCCAAACTCCAGATGCGAATAGCTTTGTTTCATGATTCACTTGGAACTACAGGGGAAATAGCGAACTAGACAAGTCAGAT
AATCATCGAGCTTTAGGAAGCGGCAGGGGGGCAACGAAGATTGACGACCACGAGGGGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAG
GGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACG
CCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTGACACCGCCCCTCCGAGCCAGGCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGC
GCAGCACCTTCCTGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCGGACATGGCTGACGGTCTCTCCTTTGTTCGAGCTTG
GAGCGAATGTGGGATTGGAGGAGCGGTG