Detailed information on CNT30286315


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7Y8|H2AV1_ORYSJ, E-value = 3e-17

BLAST vs NONCODE:
NONZMAT003285, E-value = 7e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30165626Triticum aestivumPistacia vera15.0835.3682.81128forward
CNT30435310Triticum aestivumAegilops tauschii43.9357.3899.46373forward
CNT30241962Triticum aestivumAvena sativa31.6833.0988.48269forward
CNT30143155Triticum aestivumLolium perenne25.2125.1591.59214forward
CNT30720210Triticum aestivumTriticum spelta28.3951.9499.59241forward
CNT30556700Triticum aestivumPanicum hallii20.2626.6781.4172forward

Expression of CNT30286315

Peptides detected in this lncRNA

>peptide 1 (53 aa)
GTLTNTALDTRWIQKNRGSKTLPLRSRLHGGAKQKDKLQHSLEHTIANLTQRH*

>peptide 2 (57 aa)
MRPTGNWRPALTDLVTDFFLGPPNFFPATFFSLLASIFLACSLLAGTPARGGFGGVG*

>peptide 3 (75 aa)
MLGMTPPWAMVTPLSSLPSSWSLRMASSRCLGTMRVFLLSLAAFPASSSTCSTSLLARSTPERRAAVHPKRGRGD*

>peptide 4 (46 aa)
HFNKHCIRHQMDSEEQRKQDASSSFTVTWWGKAKGQASTLSGTHHS*

Sequence

>CNT30286315
GGCACTTTAACAAACACTGCATTAGACACCAGATGGATTCAGAAGAACAGAGGAAGCAAGACGCTTCCTCTTCGTTCACGGTTACATGGTGGGGCAAAGC
AAAAGGACAAGCTTCAACACTCTCTGGAACACACCATAGCTAACTTAACACAGAGACACTAGGCACACGAGGGCTGCCGGAGCACCATCAGTTCACCGGC
ACGGCCGGATCTAGGCCTTGGTGGCCTTCTTGGGGGACTTGGTGGTCTTCTTGGGCGACTTGGGGGCGGCGCCGGCCTTCTCAGCCTTCTCAGCGGCCTT
CTTGGGGAGCAGCACCGGGTTGATGTTGGGGATGACGCCGCCGTGGGCGATGGTGACGCCGCTCAGCAGCCTCCCGAGCTCCTGGTCGTTGCGGATGGCC
AGCAGCAGGTGCCTGGGCACGATGCGGGTCTTCTTGTTGTCCTTGGCGGCGTTCCCGGCCAGCTCCAGCACCTGCAGCACAAGCTTGTTAGCTCGCTCCA
CGCCGGAGAGAAGGGCGGCGGTTCATCCGAAGAGAGGGAGGGGGGATTAAGATGGTGTTGCTTGCCTCGGCGGCGAGGTACTCGAGGACGGCGGCGAGGT
AGACGGGGGCGCCGGAGCCGACGCGCTGGGCGTAGCGGCCCTTCTTGAGGAAGCGCCCAATGCGGCCGACGGGGAACTGGAGGCCGGCCTTGACGGACCT
GGTCACCGACTTCTTCCTCGGCCCGCCGAACTTCTTCCCGGCCACCTTCTTCAGCTTGCTGGCGTCCATCTTCCTGGCTTGCTCGCTCCTTGCTGGGACT
CCGGCGAGAGGTGGATTCGGTGGGGTTGGTTGATGTGGTTTGAGTCTGG