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Detailed information on CNT30286154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460491Triticum aestivumSaccharum spontaneum16.484.6598.25171forward
CNT30678864Triticum aestivumTriticum urartu42.3887.0197.96442forward
CNT30347224Triticum aestivumEragrostis tef15.9266.493.98166forward

Expression of CNT30286154

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRPSHHAPYALGDTRATMGGTKGRDLARVS*

>peptide 2 (29 aa)
MKLKGIDGGRTSSGACGLIRCKAKNLTRA*

>peptide 3 (29 aa)
RSWLRMNAAGMLNTCKSNGKWCFQWRTGE*

>peptide 4 (34 aa)
MISSWSERMISHTGTETWPRLLREAAVGNFPQWR*

>peptide 5 (37 aa)
MAQTPTGGSSGEFSAMAVKCIEIGKNTNGESTLLGRH*

>peptide 6 (42 aa)
MPRILLKERGALGNADTGGAWLSLARAVRCWVKSRNERNPRV*

Sequence

>CNT30286154
CGATCCTGGCTCAGGATGAACGCTGCCGGCATGCTTAACACATGCAAGTCGAATGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAA
CCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCTGCCCAAGGAGGGGCTCGCGTCTGA
TTAGCTAGTTGGTGAGGTAATAGCTTACAAAGGTGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACATGGCCCAGACTCCT
ACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGAC
ACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGTTGTGCGACTCGACCCGTGCAG
TGCTGTAGCTAACGCATTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGGCGCACAAGCAGTGGAGCATGTGG
TTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTTGGGAACGCGGACACAGGTGGTGC
ATGGCTGTCGTTAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACTATGAGTTTGGAACCCTGAACAG
ACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGT
CGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCTGTCCTCAGTTCGGATCGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCG
GTCAGCCATACGGCGGTGAATCCGTTCCCGAGCCTTGTACACA