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Detailed information on CNT30285964


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Triticum aestivumSetaria viridis55.6147.3798.92649forward
CNT30519050Triticum aestivumJuglans regia70.7873.4296.13826forward
CNT30373968Triticum aestivumArabidopsis thaliana60.0745.495.72701forward
CNT30200729Triticum aestivumPisum sativum70.7833.9696.37826forward
CNT3048154Triticum aestivumPrunus dulcis68.1275.7996.23795forward
CNT30544510Triticum aestivumBrassica napus70.8751.6995.77827forward
CNT30239033Triticum aestivumBrassica oleracea70.8760.995.65827forward
CNT3010382Triticum aestivumZea mays60.6775.897.46708reverse complement
CNT30413997Triticum aestivumPapaver somniferum68.8196.1795.77803forward
CNT3036408Triticum aestivumCucumis melo69.4976.7396.92811forward

Expression of CNT30285964

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LAFKDSMVRGILQFTPGIAFRYVLHRCESRDIRCRESCGLNRFATRGTASKLDMPPG*

>peptide 2 (43 aa)
MIRFNGLPATSGAANRPRRRDLNTSPDHSIGRSDGRCVQRAGT*

>peptide 3 (40 aa)
CVQRLDGSRDSAIHTRYRISLRSSSMREPRYPLPRVVWIK*

>peptide 4 (39 aa)
LRSKTRWFAGFCNSHQVSHFATFFIDARAEISVAESRVD*

>peptide 5 (31 aa)
MTRARSVLVRVTTMILPQVHLRKPCYDFSFL*

Sequence

>CNT30285964
CTTGCGTTCAAAGACTCGATGGTTCGCGGGATTCTGCAATTCACACCAGGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTT
GCCGAGAGTCGTGTGGATTAAATAGATTTGCAACACGAGGGACGGCTAGCAAGCTAGACATGCCCCCGGGTTAGGCACAGTGTTCCTTGACGCCTTCGGC
GCCGTGGGTTGTTTTACCCCGAGCCCCCACCCGCTCCGAGGAGGGGAGGTGGTCGAGGCATTGGCCGAGCGACGGACGGTGCCGTCGCCGACGGATTGGA
TGACGCGTGCGCGGTCTGTTTTGGTCAGGGTCACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
AAGGTTCAATGGACTTCCCGCGACGTCGGGGGCGGCGAACCGCCCCCGTCGCCGCGATCTGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGG
CGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC
ATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAG
GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTA
GCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC
TCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT
TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAAT
TTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGC